564 related articles for article (PubMed ID: 25572935)
21. RNA Sequence Context Effects Measured In Vitro Predict In Vivo Protein Binding and Regulation.
Taliaferro JM; Lambert NJ; Sudmant PH; Dominguez D; Merkin JJ; Alexis MS; Bazile C; Burge CB
Mol Cell; 2016 Oct; 64(2):294-306. PubMed ID: 27720642
[TBL] [Abstract][Full Text] [Related]
22. Prediction of clustered RNA-binding protein motif sites in the mammalian genome.
Zhang C; Lee KY; Swanson MS; Darnell RB
Nucleic Acids Res; 2013 Aug; 41(14):6793-807. PubMed ID: 23685613
[TBL] [Abstract][Full Text] [Related]
23. Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA.
Polavarapu N; Mariño-Ramírez L; Landsman D; McDonald JF; Jordan IK
BMC Genomics; 2008 May; 9():226. PubMed ID: 18485226
[TBL] [Abstract][Full Text] [Related]
24. Inferring RNA sequence preferences for poorly studied RNA-binding proteins based on co-evolution.
Yang S; Wang J; Ng RT
BMC Bioinformatics; 2018 Mar; 19(1):96. PubMed ID: 29529991
[TBL] [Abstract][Full Text] [Related]
25. POSTAR: a platform for exploring post-transcriptional regulation coordinated by RNA-binding proteins.
Hu B; Yang YT; Huang Y; Zhu Y; Lu ZJ
Nucleic Acids Res; 2017 Jan; 45(D1):D104-D114. PubMed ID: 28053162
[TBL] [Abstract][Full Text] [Related]
26. Widespread contribution of transposable elements to the innovation of gene regulatory networks.
Sundaram V; Cheng Y; Ma Z; Li D; Xing X; Edge P; Snyder MP; Wang T
Genome Res; 2014 Dec; 24(12):1963-76. PubMed ID: 25319995
[TBL] [Abstract][Full Text] [Related]
27. mCarts: Genome-Wide Prediction of Clustered Sequence Motifs as Binding Sites for RNA-Binding Proteins.
Weyn-Vanhentenryck SM; Zhang C
Methods Mol Biol; 2016; 1421():215-26. PubMed ID: 26965268
[TBL] [Abstract][Full Text] [Related]
28. Identification of transcription factor binding sites derived from transposable element sequences using ChIP-seq.
Conley AB; Jordan IK
Methods Mol Biol; 2010; 674():225-40. PubMed ID: 20827595
[TBL] [Abstract][Full Text] [Related]
29. Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system.
Hogan DJ; Riordan DP; Gerber AP; Herschlag D; Brown PO
PLoS Biol; 2008 Oct; 6(10):e255. PubMed ID: 18959479
[TBL] [Abstract][Full Text] [Related]
30. A combined sequence and structure based method for discovering enriched motifs in RNA from in vivo binding data.
Polishchuk M; Paz I; Kohen R; Mesika R; Yakhini Z; Mandel-Gutfreund Y
Methods; 2017 Apr; 118-119():73-81. PubMed ID: 28274760
[TBL] [Abstract][Full Text] [Related]
31. Matrix-screening reveals a vast potential for direct protein-protein interactions among RNA binding proteins.
Lang B; Yang JS; Garriga-Canut M; Speroni S; Aschern M; Gili M; Hoffmann T; Tartaglia GG; Maurer SP
Nucleic Acids Res; 2021 Jul; 49(12):6702-6721. PubMed ID: 34133714
[TBL] [Abstract][Full Text] [Related]
32. Statistical learning quantifies transposable element-mediated cis-regulation.
Pulver C; Grun D; Duc J; Sheppard S; Planet E; Coudray A; de Fondeville R; Pontis J; Trono D
Genome Biol; 2023 Nov; 24(1):258. PubMed ID: 37950299
[TBL] [Abstract][Full Text] [Related]
33. ELAV proteins along evolution: back to the nucleus?
Colombrita C; Silani V; Ratti A
Mol Cell Neurosci; 2013 Sep; 56():447-55. PubMed ID: 23439364
[TBL] [Abstract][Full Text] [Related]
34. Role of Transposable Elements in Gene Regulation in the Human Genome.
Ali A; Han K; Liang P
Life (Basel); 2021 Feb; 11(2):. PubMed ID: 33557056
[TBL] [Abstract][Full Text] [Related]
35. Leveraging cross-link modification events in CLIP-seq for motif discovery.
Bahrami-Samani E; Penalva LO; Smith AD; Uren PJ
Nucleic Acids Res; 2015 Jan; 43(1):95-103. PubMed ID: 25505146
[TBL] [Abstract][Full Text] [Related]
36. Novel Bioinformatics Approach Identifies Transcriptional Profiles of Lineage-Specific Transposable Elements at Distinct Loci in the Human Dorsolateral Prefrontal Cortex.
Guffanti G; Bartlett A; Klengel T; Klengel C; Hunter R; Glinsky G; Macciardi F
Mol Biol Evol; 2018 Oct; 35(10):2435-2453. PubMed ID: 30053206
[TBL] [Abstract][Full Text] [Related]
37. RNA-protein binding motifs mining with a new hybrid deep learning based cross-domain knowledge integration approach.
Pan X; Shen HB
BMC Bioinformatics; 2017 Feb; 18(1):136. PubMed ID: 28245811
[TBL] [Abstract][Full Text] [Related]
38. Widespread roles of enhancer-like transposable elements in cell identity and long-range genomic interactions.
Cao Y; Chen G; Wu G; Zhang X; McDermott J; Chen X; Xu C; Jiang Q; Chen Z; Zeng Y; Ai D; Huang Y; Han JJ
Genome Res; 2019 Jan; 29(1):40-52. PubMed ID: 30455182
[TBL] [Abstract][Full Text] [Related]
39. In Silico Methods to Identify Exapted Transposable Element Families.
Ramsay L; Bourque G
Methods Mol Biol; 2016; 1400():33-45. PubMed ID: 26895045
[TBL] [Abstract][Full Text] [Related]
40. RNA Bind-n-Seq: Measuring the Binding Affinity Landscape of RNA-Binding Proteins.
Lambert NJ; Robertson AD; Burge CB
Methods Enzymol; 2015; 558():465-493. PubMed ID: 26068750
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
