These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
2. Dynamics of mutation and recombination in a replicating population of complementing, defective viral genomes. García-Arriaza J; Ojosnegros S; Dávila M; Domingo E; Escarmís C J Mol Biol; 2006 Jul; 360(3):558-72. PubMed ID: 16797586 [TBL] [Abstract][Full Text] [Related]
3. Evolution of Viral Genomes: Interplay Between Selection, Recombination, and Other Forces. Spielman SJ; Weaver S; Shank SD; Magalis BR; Li M; Kosakovsky Pond SL Methods Mol Biol; 2019; 1910():427-468. PubMed ID: 31278673 [TBL] [Abstract][Full Text] [Related]
4. Inferring Transmission Bottleneck Size from Viral Sequence Data Using a Novel Haplotype Reconstruction Method. Ghafari M; Lumby CK; Weissman DB; Illingworth CJR J Virol; 2020 Jun; 94(13):. PubMed ID: 32295920 [TBL] [Abstract][Full Text] [Related]
5. [The great virus comeback]. Forterre P Biol Aujourdhui; 2013; 207(3):153-68. PubMed ID: 24330969 [TBL] [Abstract][Full Text] [Related]
6. The variety of human virus evolution. Fitch WM Mol Phylogenet Evol; 1996 Feb; 5(1):247-58. PubMed ID: 8673293 [TBL] [Abstract][Full Text] [Related]
8. Evolution of viral genomes: interplay between selection, recombination, and other forces. Pond SL; Murrell B; Poon AF Methods Mol Biol; 2012; 856():239-72. PubMed ID: 22399462 [TBL] [Abstract][Full Text] [Related]
9. Evolutionary rates and timescale comparison of Chikungunya viruses inferred from the whole genome/E1 gene with special reference to the 2005-07 outbreak in the Indian subcontinent. Cherian SS; Walimbe AM; Jadhav SM; Gandhe SS; Hundekar SL; Mishra AC; Arankalle VA Infect Genet Evol; 2009 Jan; 9(1):16-23. PubMed ID: 18940268 [TBL] [Abstract][Full Text] [Related]
11. Getting to Know Viral Evolutionary Strategies: Towards the Next Generation of Quasispecies Models. Manrubia S; Lázaro E Curr Top Microbiol Immunol; 2016; 392():201-17. PubMed ID: 26271604 [TBL] [Abstract][Full Text] [Related]
12. Evolutionary dynamics of the influenza A pandemic (H1N1) 2009 virus with emphasis on Indian isolates: evidence for adaptive evolution in the HA gene. Mullick J; Cherian SS; Potdar VA; Chadha MS; Mishra AC Infect Genet Evol; 2011 Jul; 11(5):997-1005. PubMed ID: 21457796 [TBL] [Abstract][Full Text] [Related]
13. A phylogenetic approach to detecting reassortments in viruses with segmented genomes. Suzuki Y Gene; 2010 Sep; 464(1-2):11-6. PubMed ID: 20546849 [TBL] [Abstract][Full Text] [Related]
14. Using hidden Markov models and observed evolution to annotate viral genomes. McCauley S; Hein J Bioinformatics; 2006 Jun; 22(11):1308-16. PubMed ID: 16613911 [TBL] [Abstract][Full Text] [Related]
15. Full length genomes of genotype IIIA Hepatitis A Virus strains (1995-2008) from India and estimates of the evolutionary rates and ages. Kulkarni MA; Walimbe AM; Cherian S; Arankalle VA Infect Genet Evol; 2009 Dec; 9(6):1287-94. PubMed ID: 19723592 [TBL] [Abstract][Full Text] [Related]
16. Extensive recombination among human immunodeficiency virus type 1 quasispecies makes an important contribution to viral diversity in individual patients. Charpentier C; Nora T; Tenaillon O; Clavel F; Hance AJ J Virol; 2006 Mar; 80(5):2472-82. PubMed ID: 16474154 [TBL] [Abstract][Full Text] [Related]
17. Rates of evolutionary change in viruses: patterns and determinants. Duffy S; Shackelton LA; Holmes EC Nat Rev Genet; 2008 Apr; 9(4):267-76. PubMed ID: 18319742 [TBL] [Abstract][Full Text] [Related]
18. Inference and prediction of courses of the diseases caused by pathologic viruses by estimating molecular evolution of within-host virus. Ren F; Ogishima S; Tanaka H Stud Health Technol Inform; 2001; 84(Pt 2):979-83. PubMed ID: 11604878 [TBL] [Abstract][Full Text] [Related]
19. Evolutionary history and phylogeography of human viruses. Holmes EC Annu Rev Microbiol; 2008; 62():307-28. PubMed ID: 18785840 [TBL] [Abstract][Full Text] [Related]