These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
191 related articles for article (PubMed ID: 25577434)
21. Fast and efficient short read mapping based on a succinct hash index. Zhang H; Chan Y; Fan K; Schmidt B; Liu W BMC Bioinformatics; 2018 Mar; 19(1):92. PubMed ID: 29523083 [TBL] [Abstract][Full Text] [Related]
22. pblat: a multithread blat algorithm speeding up aligning sequences to genomes. Wang M; Kong L BMC Bioinformatics; 2019 Jan; 20(1):28. PubMed ID: 30646844 [TBL] [Abstract][Full Text] [Related]
23. BFAST: an alignment tool for large scale genome resequencing. Homer N; Merriman B; Nelson SF PLoS One; 2009 Nov; 4(11):e7767. PubMed ID: 19907642 [TBL] [Abstract][Full Text] [Related]
28. SneakySnake: a fast and accurate universal genome pre-alignment filter for CPUs, GPUs and FPGAs. Alser M; Shahroodi T; Gómez-Luna J; Alkan C; Mutlu O Bioinformatics; 2021 Apr; 36(22-23):5282-5290. PubMed ID: 33315064 [TBL] [Abstract][Full Text] [Related]
29. EDAR: an efficient error detection and removal algorithm for next generation sequencing data. Zhao X; Palmer LE; Bolanos R; Mircean C; Fasulo D; Wittenberg GM J Comput Biol; 2010 Nov; 17(11):1549-60. PubMed ID: 20973743 [TBL] [Abstract][Full Text] [Related]
30. BatMis: a fast algorithm for k-mismatch mapping. Tennakoon C; Purbojati RW; Sung WK Bioinformatics; 2012 Aug; 28(16):2122-8. PubMed ID: 22689389 [TBL] [Abstract][Full Text] [Related]
31. A novel partial sequence alignment tool for finding large deletions. Aruk T; Ustek D; Kursun O ScientificWorldJournal; 2012; 2012():694813. PubMed ID: 22566777 [TBL] [Abstract][Full Text] [Related]
32. Minimap2: pairwise alignment for nucleotide sequences. Li H Bioinformatics; 2018 Sep; 34(18):3094-3100. PubMed ID: 29750242 [TBL] [Abstract][Full Text] [Related]
33. GMAP and GSNAP for Genomic Sequence Alignment: Enhancements to Speed, Accuracy, and Functionality. Wu TD; Reeder J; Lawrence M; Becker G; Brauer MJ Methods Mol Biol; 2016; 1418():283-334. PubMed ID: 27008021 [TBL] [Abstract][Full Text] [Related]
34. Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads. Lunter G; Goodson M Genome Res; 2011 Jun; 21(6):936-9. PubMed ID: 20980556 [TBL] [Abstract][Full Text] [Related]
35. SeqHelp: a program to analyze molecular sequences utilizing common computational resources. Lee MK; Lynch ED; King MC Genome Res; 1998 Mar; 8(3):306-12. PubMed ID: 9521933 [TBL] [Abstract][Full Text] [Related]
36. A Long Fragment Aligner called ALFALFA. Vyverman M; Baets BD; Fack V; Dawyndt P BMC Bioinformatics; 2015 May; 16(1):159. PubMed ID: 25971785 [TBL] [Abstract][Full Text] [Related]
37. Tandem repeats over the edit distance. Sokol D; Benson G; Tojeira J Bioinformatics; 2007 Jan; 23(2):e30-5. PubMed ID: 17237101 [TBL] [Abstract][Full Text] [Related]