BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

113 related articles for article (PubMed ID: 25589474)

  • 1. qPMS9: an efficient algorithm for quorum Planted Motif Search.
    Nicolae M; Rajasekaran S
    Sci Rep; 2015 Jan; 5():7813. PubMed ID: 25589474
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A speedup technique for (l, d)-motif finding algorithms.
    Rajasekaran S; Dinh H
    BMC Res Notes; 2011 Mar; 4():54. PubMed ID: 21385438
    [TBL] [Abstract][Full Text] [Related]  

  • 3. qPMS7: a fast algorithm for finding (ℓ, d)-motifs in DNA and protein sequences.
    Dinh H; Rajasekaran S; Davila J
    PLoS One; 2012; 7(7):e41425. PubMed ID: 22848493
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Efficient sequential and parallel algorithms for finding edit distance based motifs.
    Pal S; Xiao P; Rajasekaran S
    BMC Genomics; 2016 Aug; 17 Suppl 4(Suppl 4):465. PubMed ID: 27557423
    [TBL] [Abstract][Full Text] [Related]  

  • 5. SamSelect: a sample sequence selection algorithm for quorum planted motif search on large DNA datasets.
    Yu Q; Wei D; Huo H
    BMC Bioinformatics; 2018 Jun; 19(1):228. PubMed ID: 29914360
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Efficient sequential and parallel algorithms for planted motif search.
    Nicolae M; Rajasekaran S
    BMC Bioinformatics; 2014 Jan; 15():34. PubMed ID: 24479443
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Fast exact algorithms for the closest string and substring problems with application to the planted (L, d)-motif model.
    Chen ZZ; Wang L
    IEEE/ACM Trans Comput Biol Bioinform; 2011; 8(5):1400-10. PubMed ID: 21282867
    [TBL] [Abstract][Full Text] [Related]  

  • 8. An Efficient Exact Algorithm for the Motif Stem Search Problem over Large Alphabets.
    Yu Q; Huo H; Vitter JS; Huan J; Nekrich Y
    IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(2):384-97. PubMed ID: 26357225
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Improved Exact Enumerative Algorithms for the Planted (l, d)-Motif Search Problem.
    Tanaka S
    IEEE/ACM Trans Comput Biol Bioinform; 2014; 11(2):361-74. PubMed ID: 26355783
    [TBL] [Abstract][Full Text] [Related]  

  • 10. ET-Motif: Solving the Exact (l, d)-Planted Motif Problem Using Error Tree Structure.
    Al-Okaily A; Huang CH
    J Comput Biol; 2016 Jul; 23(7):615-23. PubMed ID: 27152692
    [TBL] [Abstract][Full Text] [Related]  

  • 11. PMS5: an efficient exact algorithm for the (ℓ, d)-motif finding problem.
    Dinh H; Rajasekaran S; Kundeti VK
    BMC Bioinformatics; 2011 Oct; 12():410. PubMed ID: 22024209
    [TBL] [Abstract][Full Text] [Related]  

  • 12. RefSelect: a reference sequence selection algorithm for planted (l, d) motif search.
    Yu Q; Huo H; Zhao R; Feng D; Vitter JS; Huan J
    BMC Bioinformatics; 2016 Jul; 17 Suppl 9(Suppl 9):266. PubMed ID: 27454113
    [TBL] [Abstract][Full Text] [Related]  

  • 13. PairMotif: A new pattern-driven algorithm for planted (l, d) DNA motif search.
    Yu Q; Huo H; Zhang Y; Guo H
    PLoS One; 2012; 7(10):e48442. PubMed ID: 23119020
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Freezing firefly algorithm for efficient planted (ℓ, d) motif search.
    Theepalakshmi P; Reddy US
    Med Biol Eng Comput; 2022 Feb; 60(2):511-530. PubMed ID: 35020123
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Efficient algorithms for biological stems search.
    Mi T; Rajasekaran S
    BMC Bioinformatics; 2013 May; 14():161. PubMed ID: 23679045
    [TBL] [Abstract][Full Text] [Related]  

  • 16. An efficient exact algorithm for planted motif search on large DNA sequence datasets.
    Yu Q; Hu Y; Hu X; Lan J; Guo Y
    IEEE/ACM Trans Comput Biol Bioinform; 2024 May; PP():. PubMed ID: 38801693
    [TBL] [Abstract][Full Text] [Related]  

  • 17. An Efficient Algorithm for Discovering Motifs in Large DNA Data Sets.
    Yu Q; Huo H; Chen X; Guo H; Vitter JS; Huan J
    IEEE Trans Nanobioscience; 2015 Jul; 14(5):535-44. PubMed ID: 25872217
    [TBL] [Abstract][Full Text] [Related]  

  • 18. PMS6: a fast algorithm for motif discovery.
    Bandyopadhyay S; Sahni S; Rajasekaran S
    Int J Bioinform Res Appl; 2014; 10(4-5):369-83. PubMed ID: 24989858
    [TBL] [Abstract][Full Text] [Related]  

  • 19. HIGEDA: a hierarchical gene-set genetics based algorithm for finding subtle motifs in biological sequences.
    Le T; Altman T; Gardiner K
    Bioinformatics; 2010 Feb; 26(3):302-9. PubMed ID: 19996163
    [TBL] [Abstract][Full Text] [Related]  

  • 20. HSMotifDiscover: identification of motifs in sequences composed of non-single-letter elements.
    Singh VK; Misra R; Almo SC; Steidl UG; Bülow HE; Zheng D
    Bioinformatics; 2022 Aug; 38(16):4036-4038. PubMed ID: 35771633
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.