These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

191 related articles for article (PubMed ID: 25591340)

  • 1. The fast multipole method and point dipole moment polarizable force fields.
    Coles JP; Masella M
    J Chem Phys; 2015 Jan; 142(2):024109. PubMed ID: 25591340
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Conformational simulations of aqueous solvated alpha-conotoxin GI and its single disulfide analogues using a polarizable force field model.
    Jiang N; Ma J
    J Phys Chem A; 2008 Oct; 112(40):9854-67. PubMed ID: 18788721
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Treecode algorithm for pairwise electrostatic interactions with solvent-solute polarization.
    Xu Z
    Phys Rev E Stat Nonlin Soft Matter Phys; 2010 Feb; 81(2 Pt 1):020902. PubMed ID: 20365522
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Electrostatics of proteins in dielectric solvent continua. II. Hamiltonian reaction field dynamics.
    Bauer S; Tavan P; Mathias G
    J Chem Phys; 2014 Mar; 140(10):104103. PubMed ID: 24628148
    [TBL] [Abstract][Full Text] [Related]  

  • 5. CHARMM fluctuating charge force field for proteins: II protein/solvent properties from molecular dynamics simulations using a nonadditive electrostatic model.
    Patel S; Mackerell AD; Brooks CL
    J Comput Chem; 2004 Sep; 25(12):1504-14. PubMed ID: 15224394
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Protein simulation using coarse-grained two-bead multipole force field with polarizable water models.
    Li M; Zhang JZ
    J Chem Phys; 2017 Feb; 146(6):065101. PubMed ID: 28201893
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Adaptive resolution simulation of polarizable supramolecular coarse-grained water models.
    Zavadlav J; Melo MN; Marrink SJ; Praprotnik M
    J Chem Phys; 2015 Jun; 142(24):244118. PubMed ID: 26133421
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Fast evaluation of polarizable forces.
    Wang W; Skeel RD
    J Chem Phys; 2005 Oct; 123(16):164107. PubMed ID: 16268681
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A multiscale coarse-grained polarizable solvent model for handling long tail bulk electrostatics.
    Masella M; Borgis D; Cuniasse P
    J Comput Chem; 2013 May; 34(13):1112-24. PubMed ID: 23382002
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Combining a polarizable force-field and a coarse-grained polarizable solvent model. II. Accounting for hydrophobic effects.
    Masella M; Borgis D; Cuniasse P
    J Comput Chem; 2011 Sep; 32(12):2664-78. PubMed ID: 21647929
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Separation of time scale and coupling in the motion governed by the coarse-grained and fine degrees of freedom in a polypeptide backbone.
    Murarka RK; Liwo A; Scheraga HA
    J Chem Phys; 2007 Oct; 127(15):155103. PubMed ID: 17949219
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A Polarizable Atomic Multipole-Based Force Field for Molecular Dynamics Simulations of Anionic Lipids.
    Chu H; Peng X; Li Y; Zhang Y; Li G
    Molecules; 2017 Dec; 23(1):. PubMed ID: 29301229
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A multipole-based water potential with implicit polarization for biomolecular simulations.
    Walsh TR; Liang T
    J Comput Chem; 2009 Apr; 30(6):893-9. PubMed ID: 18785240
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Multi-layer coarse-graining polarization model for treating electrostatic interactions of solvated α-conotoxin peptides.
    Jiang N; Ma J
    J Chem Phys; 2012 Apr; 136(13):134105. PubMed ID: 22482538
    [TBL] [Abstract][Full Text] [Related]  

  • 15. On the dynamics of ionic liquids: comparisons between electronically polarizable and nonpolarizable models II.
    Yan T; Wang Y; Knox C
    J Phys Chem B; 2010 May; 114(20):6886-904. PubMed ID: 20443608
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Transport and dielectric properties of water and the influence of coarse-graining: comparing BMW, SPC/E, and TIP3P models.
    Braun D; Boresch S; Steinhauser O
    J Chem Phys; 2014 Feb; 140(6):064107. PubMed ID: 24527900
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Some practical approaches to treating electrostatic polarization of proteins.
    Ji C; Mei Y
    Acc Chem Res; 2014 Sep; 47(9):2795-803. PubMed ID: 24883956
    [TBL] [Abstract][Full Text] [Related]  

  • 18.
    Zhao S; Wei H; Cieplak P; Duan Y; Luo R
    J Chem Theory Comput; 2022 Jun; 18(6):3654-3670. PubMed ID: 35537209
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Generalized coarse-grained model based on point multipole and Gay-Berne potentials.
    Golubkov PA; Ren P
    J Chem Phys; 2006 Aug; 125(6):64103. PubMed ID: 16942269
    [TBL] [Abstract][Full Text] [Related]  

  • 20. TMFF-A Two-Bead Multipole Force Field for Coarse-Grained Molecular Dynamics Simulation of Protein.
    Li M; Liu F; Zhang JZ
    J Chem Theory Comput; 2016 Dec; 12(12):6147-6156. PubMed ID: 27782390
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.