These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

421 related articles for article (PubMed ID: 25604327)

  • 21. OpenMS - an open-source software framework for mass spectrometry.
    Sturm M; Bertsch A; Gröpl C; Hildebrandt A; Hussong R; Lange E; Pfeifer N; Schulz-Trieglaff O; Zerck A; Reinert K; Kohlbacher O
    BMC Bioinformatics; 2008 Mar; 9():163. PubMed ID: 18366760
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Comparison of peak-picking workflows for untargeted liquid chromatography/high-resolution mass spectrometry metabolomics data analysis.
    Rafiei A; Sleno L
    Rapid Commun Mass Spectrom; 2015 Jan; 29(1):119-27. PubMed ID: 25462372
    [TBL] [Abstract][Full Text] [Related]  

  • 23. OpenMS and TOPP: open source software for LC-MS data analysis.
    Bertsch A; Gröpl C; Reinert K; Kohlbacher O
    Methods Mol Biol; 2011; 696():353-67. PubMed ID: 21063960
    [TBL] [Abstract][Full Text] [Related]  

  • 24. An automated pipeline for high-throughput label-free quantitative proteomics.
    Weisser H; Nahnsen S; Grossmann J; Nilse L; Quandt A; Brauer H; Sturm M; Kenar E; Kohlbacher O; Aebersold R; Malmström L
    J Proteome Res; 2013 Apr; 12(4):1628-44. PubMed ID: 23391308
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Benchmarking quantitative label-free LC-MS data processing workflows using a complex spiked proteomic standard dataset.
    Ramus C; Hovasse A; Marcellin M; Hesse AM; Mouton-Barbosa E; Bouyssié D; Vaca S; Carapito C; Chaoui K; Bruley C; Garin J; Cianférani S; Ferro M; Van Dorssaeler A; Burlet-Schiltz O; Schaeffer C; Couté Y; Gonzalez de Peredo A
    J Proteomics; 2016 Jan; 132():51-62. PubMed ID: 26585461
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Generic workflow for quality assessment of quantitative label-free LC-MS analysis.
    Sandin M; Krogh M; Hansson K; Levander F
    Proteomics; 2011 Mar; 11(6):1114-24. PubMed ID: 21298787
    [TBL] [Abstract][Full Text] [Related]  

  • 27. An Adaptive Pipeline To Maximize Isobaric Tagging Data in Large-Scale MS-Based Proteomics.
    Corthésy J; Theofilatos K; Mavroudi S; Macron C; Cominetti O; Remlawi M; Ferraro F; Núñez Galindo A; Kussmann M; Likothanassis S; Dayon L
    J Proteome Res; 2018 Jun; 17(6):2165-2173. PubMed ID: 29695160
    [TBL] [Abstract][Full Text] [Related]  

  • 28. OpenMS and TOPP: open source software for LC-MS data analysis.
    Reinert K; Kohlbacher O
    Methods Mol Biol; 2010; 604():201-11. PubMed ID: 20013373
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Data acquisition workflows in liquid chromatography coupled to high resolution mass spectrometry-based metabolomics: Where do we stand?
    Fenaille F; Barbier Saint-Hilaire P; Rousseau K; Junot C
    J Chromatogr A; 2017 Dec; 1526():1-12. PubMed ID: 29074071
    [TBL] [Abstract][Full Text] [Related]  

  • 30. CoreFlow: a computational platform for integration, analysis and modeling of complex biological data.
    Pasculescu A; Schoof EM; Creixell P; Zheng Y; Olhovsky M; Tian R; So J; Vanderlaan RD; Pawson T; Linding R; Colwill K
    J Proteomics; 2014 Apr; 100():167-73. PubMed ID: 24503186
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Nephron Toxicity Profiling via Untargeted Metabolome Analysis Employing a High Performance Liquid Chromatography-Mass Spectrometry-based Experimental and Computational Pipeline.
    Ranninger C; Rurik M; Limonciel A; Ruzek S; Reischl R; Wilmes A; Jennings P; Hewitt P; Dekant W; Kohlbacher O; Huber CG
    J Biol Chem; 2015 Jul; 290(31):19121-32. PubMed ID: 26055719
    [TBL] [Abstract][Full Text] [Related]  

  • 32. LFQProfiler and RNP(xl): Open-Source Tools for Label-Free Quantification and Protein-RNA Cross-Linking Integrated into Proteome Discoverer.
    Veit J; Sachsenberg T; Chernev A; Aicheler F; Urlaub H; Kohlbacher O
    J Proteome Res; 2016 Sep; 15(9):3441-8. PubMed ID: 27476824
    [TBL] [Abstract][Full Text] [Related]  

  • 33. APOSTL: An Interactive Galaxy Pipeline for Reproducible Analysis of Affinity Proteomics Data.
    Kuenzi BM; Borne AL; Li J; Haura EB; Eschrich SA; Koomen JM; Rix U; Stewart PA
    J Proteome Res; 2016 Dec; 15(12):4747-4754. PubMed ID: 27680298
    [TBL] [Abstract][Full Text] [Related]  

  • 34. MeltDB: a software platform for the analysis and integration of metabolomics experiment data.
    Neuweger H; Albaum SP; Dondrup M; Persicke M; Watt T; Niehaus K; Stoye J; Goesmann A
    Bioinformatics; 2008 Dec; 24(23):2726-32. PubMed ID: 18765459
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Hydra: software for tailored processing of H/D exchange data from MS or tandem MS analyses.
    Slysz GW; Baker CA; Bozsa BM; Dang A; Percy AJ; Bennett M; Schriemer DC
    BMC Bioinformatics; 2009 May; 10():162. PubMed ID: 19473537
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Extending KNIME for next-generation sequencing data analysis.
    Jagla B; Wiswedel B; Coppée JY
    Bioinformatics; 2011 Oct; 27(20):2907-9. PubMed ID: 21873641
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Highly accelerated feature detection in proteomics data sets using modern graphics processing units.
    Hussong R; Gregorius B; Tholey A; Hildebrandt A
    Bioinformatics; 2009 Aug; 25(15):1937-43. PubMed ID: 19447788
    [TBL] [Abstract][Full Text] [Related]  

  • 38. SLAW: A Scalable and Self-Optimizing Processing Workflow for Untargeted LC-MS.
    Delabriere A; Warmer P; Brennsteiner V; Zamboni N
    Anal Chem; 2021 Nov; 93(45):15024-15032. PubMed ID: 34735114
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Biowep: a workflow enactment portal for bioinformatics applications.
    Romano P; Bartocci E; Bertolini G; De Paoli F; Marra D; Mauri G; Merelli E; Milanesi L
    BMC Bioinformatics; 2007 Mar; 8 Suppl 1(Suppl 1):S19. PubMed ID: 17430563
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Workflow4Metabolomics: a collaborative research infrastructure for computational metabolomics.
    Giacomoni F; Le Corguillé G; Monsoor M; Landi M; Pericard P; Pétéra M; Duperier C; Tremblay-Franco M; Martin JF; Jacob D; Goulitquer S; Thévenot EA; Caron C
    Bioinformatics; 2015 May; 31(9):1493-5. PubMed ID: 25527831
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 22.