463 related articles for article (PubMed ID: 25611135)
1. Structure and thermodynamics of N6-methyladenosine in RNA: a spring-loaded base modification.
Roost C; Lynch SR; Batista PJ; Qu K; Chang HY; Kool ET
J Am Chem Soc; 2015 Feb; 137(5):2107-15. PubMed ID: 25611135
[TBL] [Abstract][Full Text] [Related]
2. The thermodynamic stability of RNA duplexes and hairpins containing N6-alkyladenosines and 2-methylthio-N6-alkyladenosines.
Kierzek E; Kierzek R
Nucleic Acids Res; 2003 Aug; 31(15):4472-80. PubMed ID: 12888507
[TBL] [Abstract][Full Text] [Related]
3. NMR Chemical Exchange Measurements Reveal That
Shi H; Liu B; Nussbaumer F; Rangadurai A; Kreutz C; Al-Hashimi HM
J Am Chem Soc; 2019 Dec; 141(51):19988-19993. PubMed ID: 31826614
[No Abstract] [Full Text] [Related]
4. Nearest neighbor parameters for inosine x uridine pairs in RNA duplexes.
Wright DJ; Rice JL; Yanker DM; Znosko BM
Biochemistry; 2007 Apr; 46(15):4625-34. PubMed ID: 17378583
[TBL] [Abstract][Full Text] [Related]
5. Methylation of the nucleobases in RNA oligonucleotides mediates duplex-hairpin conversion.
Micura R; Pils W; Höbartner C; Grubmayr K; Ebert MO; Jaun B
Nucleic Acids Res; 2001 Oct; 29(19):3997-4005. PubMed ID: 11574682
[TBL] [Abstract][Full Text] [Related]
6. Watson-Crick hydrogen bonding of unlocked nucleic acids.
Langkjær N; Wengel J; Pasternak A
Bioorg Med Chem Lett; 2015 Nov; 25(22):5064-6. PubMed ID: 26497284
[TBL] [Abstract][Full Text] [Related]
7. A potentially abundant junctional RNA motif stabilized by m
Liu B; Merriman DK; Choi SH; Schumacher MA; Plangger R; Kreutz C; Horner SM; Meyer KD; Al-Hashimi HM
Nat Commun; 2018 Jul; 9(1):2761. PubMed ID: 30018356
[TBL] [Abstract][Full Text] [Related]
8. Surprising base pairing and structural properties of 2'-trifluoromethylthio-modified ribonucleic acids.
Košutić M; Jud L; Da Veiga C; Frener M; Fauster K; Kreutz C; Ennifar E; Micura R
J Am Chem Soc; 2014 May; 136(18):6656-63. PubMed ID: 24766131
[TBL] [Abstract][Full Text] [Related]
9. Thermodynamics of unpaired terminal nucleotides on short RNA helixes correlates with stacking at helix termini in larger RNAs.
Burkard ME; Kierzek R; Turner DH
J Mol Biol; 1999 Jul; 290(5):967-82. PubMed ID: 10438596
[TBL] [Abstract][Full Text] [Related]
10. N(6)-Methyladenosine Modification in a Long Noncoding RNA Hairpin Predisposes Its Conformation to Protein Binding.
Zhou KI; Parisien M; Dai Q; Liu N; Diatchenko L; Sachleben JR; Pan T
J Mol Biol; 2016 Feb; 428(5 Pt A):822-833. PubMed ID: 26343757
[TBL] [Abstract][Full Text] [Related]
11. Secondary structure prediction for RNA sequences including N
Kierzek E; Zhang X; Watson RM; Kennedy SD; Szabat M; Kierzek R; Mathews DH
Nat Commun; 2022 Mar; 13(1):1271. PubMed ID: 35277476
[TBL] [Abstract][Full Text] [Related]
12. A quantitative model predicts how m
Liu B; Shi H; Rangadurai A; Nussbaumer F; Chu CC; Erharter KA; Case DA; Kreutz C; Al-Hashimi HM
Nat Commun; 2021 Aug; 12(1):5201. PubMed ID: 34465779
[TBL] [Abstract][Full Text] [Related]
13. Backbone-base inclination as a fundamental determinant of nucleic acid self- and cross-pairing.
Pallan PS; Lubini P; Bolli M; Egli M
Nucleic Acids Res; 2007; 35(19):6611-24. PubMed ID: 17905816
[TBL] [Abstract][Full Text] [Related]
14. Atomic structures of excited state A-T Hoogsteen base pairs in duplex DNA by combining NMR relaxation dispersion, mutagenesis, and chemical shift calculations.
Shi H; Clay MC; Rangadurai A; Sathyamoorthy B; Case DA; Al-Hashimi HM
J Biomol NMR; 2018 Apr; 70(4):229-244. PubMed ID: 29675775
[TBL] [Abstract][Full Text] [Related]
15. Non-nearest-neighbor dependence of the stability for RNA bulge loops based on the complete set of group I single-nucleotide bulge loops.
Blose JM; Manni ML; Klapec KA; Stranger-Jones Y; Zyra AC; Sim V; Griffith CA; Long JD; Serra MJ
Biochemistry; 2007 Dec; 46(51):15123-35. PubMed ID: 18047298
[TBL] [Abstract][Full Text] [Related]
16. m(1)A and m(1)G disrupt A-RNA structure through the intrinsic instability of Hoogsteen base pairs.
Zhou H; Kimsey IJ; Nikolova EN; Sathyamoorthy B; Grazioli G; McSally J; Bai T; Wunderlich CH; Kreutz C; Andricioaei I; Al-Hashimi HM
Nat Struct Mol Biol; 2016 Sep; 23(9):803-10. PubMed ID: 27478929
[TBL] [Abstract][Full Text] [Related]
17. Why are Hoogsteen base pairs energetically disfavored in A-RNA compared to B-DNA?
Rangadurai A; Zhou H; Merriman DK; Meiser N; Liu B; Shi H; Szymanski ES; Al-Hashimi HM
Nucleic Acids Res; 2018 Nov; 46(20):11099-11114. PubMed ID: 30285154
[TBL] [Abstract][Full Text] [Related]
18. Thermodynamic contribution and nearest-neighbor parameters of pseudouridine-adenosine base pairs in oligoribonucleotides.
Hudson GA; Bloomingdale RJ; Znosko BM
RNA; 2013 Nov; 19(11):1474-82. PubMed ID: 24062573
[TBL] [Abstract][Full Text] [Related]
19. The crystal structure of the octamer [r(guauaca)dC]2 with six Watson-Crick base-pairs and two 3' overhang residues.
Shi K; Biswas R; Mitra SN; Sundaralingam M
J Mol Biol; 2000 May; 299(1):113-22. PubMed ID: 10860726
[TBL] [Abstract][Full Text] [Related]
20. Effects of N2,N2-dimethylguanosine on RNA structure and stability: crystal structure of an RNA duplex with tandem m2 2G:A pairs.
Pallan PS; Kreutz C; Bosio S; Micura R; Egli M
RNA; 2008 Oct; 14(10):2125-35. PubMed ID: 18772248
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
