188 related articles for article (PubMed ID: 25614183)
1. Investigating Hydrophilic Pores in Model Lipid Bilayers Using Molecular Simulations: Correlating Bilayer Properties with Pore-Formation Thermodynamics.
Hu Y; Sinha SK; Patel S
Langmuir; 2015 Jun; 31(24):6615-31. PubMed ID: 25614183
[TBL] [Abstract][Full Text] [Related]
2. Translocation thermodynamics of linear and cyclic nonaarginine into model DPPC bilayer via coarse-grained molecular dynamics simulation: implications of pore formation and nonadditivity.
Hu Y; Liu X; Sinha SK; Patel S
J Phys Chem B; 2014 Mar; 118(10):2670-82. PubMed ID: 24506488
[TBL] [Abstract][Full Text] [Related]
3. The importance of membrane defects-lessons from simulations.
Bennett WF; Tieleman DP
Acc Chem Res; 2014 Aug; 47(8):2244-51. PubMed ID: 24892900
[TBL] [Abstract][Full Text] [Related]
4. Thermodynamics of cell-penetrating HIV1 TAT peptide insertion into PC/PS/CHOL model bilayers through transmembrane pores: the roles of cholesterol and anionic lipids.
Hu Y; Patel S
Soft Matter; 2016 Aug; 12(32):6716-27. PubMed ID: 27435187
[TBL] [Abstract][Full Text] [Related]
5. Antimicrobial Peptide Simulations and the Influence of Force Field on the Free Energy for Pore Formation in Lipid Bilayers.
Bennett WF; Hong CK; Wang Y; Tieleman DP
J Chem Theory Comput; 2016 Sep; 12(9):4524-33. PubMed ID: 27529120
[TBL] [Abstract][Full Text] [Related]
6. Coarse-grained molecular dynamics of membrane semitoroidal pore formation in model lipid-peptide systems.
Ermakova E; Kurbanov R; Zuev Y
J Mol Graph Model; 2019 Mar; 87():1-10. PubMed ID: 30448729
[TBL] [Abstract][Full Text] [Related]
7. Structural and Thermodynamic Insight into Spontaneous Membrane-Translocating Peptides Across Model PC/PG Lipid Bilayers.
Hu Y; Patel S
J Membr Biol; 2015 Jun; 248(3):505-15. PubMed ID: 25008278
[TBL] [Abstract][Full Text] [Related]
8. Free energy of hydrophilic and hydrophobic pores in lipid bilayers by free energy perturbation of a restraint.
Dixit M; Lazaridis T
J Chem Phys; 2020 Aug; 153(5):054101. PubMed ID: 32770888
[TBL] [Abstract][Full Text] [Related]
9. Pore formation in lipid membrane I: Continuous reversible trajectory from intact bilayer through hydrophobic defect to transversal pore.
Akimov SA; Volynsky PE; Galimzyanov TR; Kuzmin PI; Pavlov KV; Batishchev OV
Sci Rep; 2017 Sep; 7(1):12152. PubMed ID: 28939906
[TBL] [Abstract][Full Text] [Related]
10. Adsorption and insertion of polyarginine peptides into membrane pores: The trade-off between electrostatics, acid-base chemistry and pore formation energy.
Ramírez PG; Del Pópolo MG; Vila JA; Szleifer I; Longo GS
J Colloid Interface Sci; 2019 Sep; 552():701-711. PubMed ID: 31176053
[TBL] [Abstract][Full Text] [Related]
11. Protein-fluctuation-induced water-pore formation in ion channel voltage-sensor translocation across a lipid bilayer membrane.
Rajapaksha SP; Pal N; Zheng D; Lu HP
Phys Rev E Stat Nonlin Soft Matter Phys; 2015; 92(5):052719. PubMed ID: 26651735
[TBL] [Abstract][Full Text] [Related]
12. Free energy of translocating an arginine-rich cell-penetrating peptide across a lipid bilayer suggests pore formation.
Huang K; García AE
Biophys J; 2013 Jan; 104(2):412-20. PubMed ID: 23442863
[TBL] [Abstract][Full Text] [Related]
13. Atomistic simulations of pore formation and closure in lipid bilayers.
Bennett WF; Sapay N; Tieleman DP
Biophys J; 2014 Jan; 106(1):210-9. PubMed ID: 24411253
[TBL] [Abstract][Full Text] [Related]
14. How arginine derivatives alter the stability of lipid membranes: dissecting the roles of side chains, backbone and termini.
Verbeek SF; Awasthi N; Teiwes NK; Mey I; Hub JS; Janshoff A
Eur Biophys J; 2021 Mar; 50(2):127-142. PubMed ID: 33661339
[TBL] [Abstract][Full Text] [Related]
15. Influence of hydrophobic mismatch on structures and dynamics of gramicidin a and lipid bilayers.
Kim T; Lee KI; Morris P; Pastor RW; Andersen OS; Im W
Biophys J; 2012 Apr; 102(7):1551-60. PubMed ID: 22500755
[TBL] [Abstract][Full Text] [Related]
16. Reconciling structural and thermodynamic predictions using all-atom and coarse-grain force fields: the case of charged oligo-arginine translocation into DMPC bilayers.
Hu Y; Sinha SK; Patel S
J Phys Chem B; 2014 Oct; 118(41):11973-92. PubMed ID: 25290376
[TBL] [Abstract][Full Text] [Related]
17. Coarse-grained simulation studies of peptide-induced pore formation.
Illya G; Deserno M
Biophys J; 2008 Nov; 95(9):4163-73. PubMed ID: 18641080
[TBL] [Abstract][Full Text] [Related]
18. Quantitative Characterization of Protein-Lipid Interactions by Free Energy Simulation between Binary Bilayers.
Park S; Yeom MS; Andersen OS; Pastor RW; Im W
J Chem Theory Comput; 2019 Nov; 15(11):6491-6503. PubMed ID: 31560853
[TBL] [Abstract][Full Text] [Related]
19. Coarse-grained simulations of hemolytic peptide δ-lysin interacting with a POPC bilayer.
King MJ; Bennett AL; Almeida PF; Lee HS
Biochim Biophys Acta; 2016 Dec; 1858(12):3182-3194. PubMed ID: 27720634
[TBL] [Abstract][Full Text] [Related]
20. Molecular dynamics simulations of hydrophilic pores in lipid bilayers.
Leontiadou H; Mark AE; Marrink SJ
Biophys J; 2004 Apr; 86(4):2156-64. PubMed ID: 15041656
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]