354 related articles for article (PubMed ID: 25632825)
1. Differential stabilities and sequence-dependent base pair opening dynamics of Watson-Crick base pairs with 5-hydroxymethylcytosine, 5-formylcytosine, or 5-carboxylcytosine.
Szulik MW; Pallan PS; Nocek B; Voehler M; Banerjee S; Brooks S; Joachimiak A; Egli M; Eichman BF; Stone MP
Biochemistry; 2015 Feb; 54(5):1294-305. PubMed ID: 25632825
[TBL] [Abstract][Full Text] [Related]
2. Weakened N3 Hydrogen Bonding by 5-Formylcytosine and 5-Carboxylcytosine Reduces Their Base-Pairing Stability.
Dai Q; Sanstead PJ; Peng CS; Han D; He C; Tokmakoff A
ACS Chem Biol; 2016 Feb; 11(2):470-7. PubMed ID: 26641274
[TBL] [Abstract][Full Text] [Related]
3. Excision of 5-hydroxymethyluracil and 5-carboxylcytosine by the thymine DNA glycosylase domain: its structural basis and implications for active DNA demethylation.
Hashimoto H; Hong S; Bhagwat AS; Zhang X; Cheng X
Nucleic Acids Res; 2012 Nov; 40(20):10203-14. PubMed ID: 22962365
[TBL] [Abstract][Full Text] [Related]
4. Dysregulation and prognostic potential of 5-methylcytosine (5mC), 5-hydroxymethylcytosine (5hmC), 5-formylcytosine (5fC), and 5-carboxylcytosine (5caC) levels in prostate cancer.
Storebjerg TM; Strand SH; Høyer S; Lynnerup AS; Borre M; Ørntoft TF; Sørensen KD
Clin Epigenetics; 2018 Aug; 10(1):105. PubMed ID: 30086793
[TBL] [Abstract][Full Text] [Related]
5. Generation and replication-dependent dilution of 5fC and 5caC during mouse preimplantation development.
Inoue A; Shen L; Dai Q; He C; Zhang Y
Cell Res; 2011 Dec; 21(12):1670-6. PubMed ID: 22124233
[TBL] [Abstract][Full Text] [Related]
6. Roles of TET and TDG in DNA demethylation in proliferating and non-proliferating immune cells.
Onodera A; González-Avalos E; Lio CJ; Georges RO; Bellacosa A; Nakayama T; Rao A
Genome Biol; 2021 Jun; 22(1):186. PubMed ID: 34158086
[TBL] [Abstract][Full Text] [Related]
7. Single-base resolution analysis of active DNA demethylation using methylase-assisted bisulfite sequencing.
Wu H; Wu X; Shen L; Zhang Y
Nat Biotechnol; 2014 Dec; 32(12):1231-40. PubMed ID: 25362244
[TBL] [Abstract][Full Text] [Related]
8. Single-Base Resolution Analysis of 5-Formyl and 5-Carboxyl Cytosine Reveals Promoter DNA Methylation Dynamics.
Neri F; Incarnato D; Krepelova A; Rapelli S; Anselmi F; Parlato C; Medana C; Dal Bello F; Oliviero S
Cell Rep; 2015 Feb; 10(5):674-683. PubMed ID: 25660018
[TBL] [Abstract][Full Text] [Related]
9. Molecular basis for 5-carboxycytosine recognition by RNA polymerase II elongation complex.
Wang L; Zhou Y; Xu L; Xiao R; Lu X; Chen L; Chong J; Li H; He C; Fu XD; Wang D
Nature; 2015 Jul; 523(7562):621-5. PubMed ID: 26123024
[TBL] [Abstract][Full Text] [Related]
10. Transient accumulation of 5-carboxylcytosine indicates involvement of active demethylation in lineage specification of neural stem cells.
Wheldon LM; Abakir A; Ferjentsik Z; Dudnakova T; Strohbuecker S; Christie D; Dai N; Guan S; Foster JM; Corrêa IR; Loose M; Dixon JE; Sottile V; Johnson AD; Ruzov A
Cell Rep; 2014 Jun; 7(5):1353-1361. PubMed ID: 24882006
[TBL] [Abstract][Full Text] [Related]
11. Genome-wide analysis reveals TET- and TDG-dependent 5-methylcytosine oxidation dynamics.
Shen L; Wu H; Diep D; Yamaguchi S; D'Alessio AC; Fung HL; Zhang K; Zhang Y
Cell; 2013 Apr; 153(3):692-706. PubMed ID: 23602152
[TBL] [Abstract][Full Text] [Related]
12. Genome-wide profiling of 5-formylcytosine reveals its roles in epigenetic priming.
Song CX; Szulwach KE; Dai Q; Fu Y; Mao SQ; Lin L; Street C; Li Y; Poidevin M; Wu H; Gao J; Liu P; Li L; Xu GL; Jin P; He C
Cell; 2013 Apr; 153(3):678-91. PubMed ID: 23602153
[TBL] [Abstract][Full Text] [Related]
13. Structural insight into substrate preference for TET-mediated oxidation.
Hu L; Lu J; Cheng J; Rao Q; Li Z; Hou H; Lou Z; Zhang L; Li W; Gong W; Liu M; Sun C; Yin X; Li J; Tan X; Wang P; Wang Y; Fang D; Cui Q; Yang P; He C; Jiang H; Luo C; Xu Y
Nature; 2015 Nov; 527(7576):118-22. PubMed ID: 26524525
[TBL] [Abstract][Full Text] [Related]
14. Epigenetic modifications in DNA could mimic oxidative DNA damage: A double-edged sword.
Ito S; Kuraoka I
DNA Repair (Amst); 2015 Aug; 32():52-57. PubMed ID: 25956859
[TBL] [Abstract][Full Text] [Related]
15. Genome-wide distribution of 5-formylcytosine in embryonic stem cells is associated with transcription and depends on thymine DNA glycosylase.
Raiber EA; Beraldi D; Ficz G; Burgess HE; Branco MR; Murat P; Oxley D; Booth MJ; Reik W; Balasubramanian S
Genome Biol; 2012 Aug; 13(8):R69. PubMed ID: 22902005
[TBL] [Abstract][Full Text] [Related]
16. Direct decarboxylation of ten-eleven translocation-produced 5-carboxylcytosine in mammalian genomes forms a new mechanism for active DNA demethylation.
Feng Y; Chen JJ; Xie NB; Ding JH; You XJ; Tao WB; Zhang X; Yi C; Zhou X; Yuan BF; Feng YQ
Chem Sci; 2021 Sep; 12(34):11322-11329. PubMed ID: 34567494
[TBL] [Abstract][Full Text] [Related]
17. Thymine DNA glycosylase recognizes the geometry alteration of minor grooves induced by 5-formylcytosine and 5-carboxylcytosine.
Fu T; Liu L; Yang QL; Wang Y; Xu P; Zhang L; Liu S; Dai Q; Ji Q; Xu GL; He C; Luo C; Zhang L
Chem Sci; 2019 Aug; 10(31):7407-7417. PubMed ID: 31489163
[TBL] [Abstract][Full Text] [Related]
18. [Oxidation and deamination of nucleobases as an epigenetic tool].
Guz J; Jurgowiak M; Oliński R
Postepy Hig Med Dosw (Online); 2012 May; 66():275-86. PubMed ID: 22706113
[TBL] [Abstract][Full Text] [Related]
19. Selective excision of 5-carboxylcytosine by a thymine DNA glycosylase mutant.
Hashimoto H; Zhang X; Cheng X
J Mol Biol; 2013 Mar; 425(6):971-6. PubMed ID: 23337108
[TBL] [Abstract][Full Text] [Related]
20. 5-hydroxymethylcytosines regulate gene expression as a passive DNA demethylation resisting epigenetic mark in proliferative somatic cells.
Wei A; Zhang H; Qiu Q; Fabyanic EB; Hu P; Wu H
bioRxiv; 2023 Sep; ():. PubMed ID: 37808741
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
