These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
794 related articles for article (PubMed ID: 25635462)
1. Enhancer evolution across 20 mammalian species. Villar D; Berthelot C; Aldridge S; Rayner TF; Lukk M; Pignatelli M; Park TJ; Deaville R; Erichsen JT; Jasinska AJ; Turner JM; Bertelsen MF; Murchison EP; Flicek P; Odom DT Cell; 2015 Jan; 160(3):554-66. PubMed ID: 25635462 [TBL] [Abstract][Full Text] [Related]
2. LINE retrotransposons characterize mammalian tissue-specific and evolutionarily dynamic regulatory regions. Roller M; Stamper E; Villar D; Izuogu O; Martin F; Redmond AM; Ramachanderan R; Harewood L; Odom DT; Flicek P Genome Biol; 2021 Feb; 22(1):62. PubMed ID: 33602314 [TBL] [Abstract][Full Text] [Related]
3. Complexity and conservation of regulatory landscapes underlie evolutionary resilience of mammalian gene expression. Berthelot C; Villar D; Horvath JE; Odom DT; Flicek P Nat Ecol Evol; 2018 Jan; 2(1):152-163. PubMed ID: 29180706 [TBL] [Abstract][Full Text] [Related]
4. Complementary evolution of coding and noncoding sequence underlies mammalian hairlessness. Kowalczyk A; Chikina M; Clark N Elife; 2022 Nov; 11():. PubMed ID: 36342464 [TBL] [Abstract][Full Text] [Related]
5. Disease Heritability Enrichment of Regulatory Elements Is Concentrated in Elements with Ancient Sequence Age and Conserved Function across Species. Hujoel MLA; Gazal S; Hormozdiari F; van de Geijn B; Price AL Am J Hum Genet; 2019 Apr; 104(4):611-624. PubMed ID: 30905396 [TBL] [Abstract][Full Text] [Related]
6. A novel test for selection on cis-regulatory elements reveals positive and negative selection acting on mammalian transcriptional enhancers. Smith JD; McManus KF; Fraser HB Mol Biol Evol; 2013 Nov; 30(11):2509-18. PubMed ID: 23904330 [TBL] [Abstract][Full Text] [Related]
7. Evaluating Enhancer Function and Transcription. Field A; Adelman K Annu Rev Biochem; 2020 Jun; 89():213-234. PubMed ID: 32197056 [TBL] [Abstract][Full Text] [Related]
8. Genome organization and long-range regulation of gene expression by enhancers. Smallwood A; Ren B Curr Opin Cell Biol; 2013 Jun; 25(3):387-94. PubMed ID: 23465541 [TBL] [Abstract][Full Text] [Related]
9. Prediction of gene regulatory enhancers across species reveals evolutionarily conserved sequence properties. Chen L; Fish AE; Capra JA PLoS Comput Biol; 2018 Oct; 14(10):e1006484. PubMed ID: 30286077 [TBL] [Abstract][Full Text] [Related]
10. A genome alignment of 120 mammals highlights ultraconserved element variability and placenta-associated enhancers. Hecker N; Hiller M Gigascience; 2020 Jan; 9(1):. PubMed ID: 31899510 [TBL] [Abstract][Full Text] [Related]
11. Ancient exaptation of a CORE-SINE retroposon into a highly conserved mammalian neuronal enhancer of the proopiomelanocortin gene. Santangelo AM; de Souza FS; Franchini LF; Bumaschny VF; Low MJ; Rubinstein M PLoS Genet; 2007 Oct; 3(10):1813-26. PubMed ID: 17922573 [TBL] [Abstract][Full Text] [Related]
12. Predicting enhancers in mammalian genomes using supervised hidden Markov models. Zehnder T; Benner P; Vingron M BMC Bioinformatics; 2019 Mar; 20(1):157. PubMed ID: 30917778 [TBL] [Abstract][Full Text] [Related]
14. Cis and trans effects differentially contribute to the evolution of promoters and enhancers. Mattioli K; Oliveros W; Gerhardinger C; Andergassen D; Maass PG; Rinn JL; Melé M Genome Biol; 2020 Aug; 21(1):210. PubMed ID: 32819422 [TBL] [Abstract][Full Text] [Related]
15. Independent Transposon Exaptation Is a Widespread Mechanism of Redundant Enhancer Evolution in the Mammalian Genome. Barth NKH; Li L; Taher L Genome Biol Evol; 2020 Mar; 12(3):1-17. PubMed ID: 31950992 [TBL] [Abstract][Full Text] [Related]
16. Evolutionary Innovations in Conserved Regulatory Elements Associate With Developmental Genes in Mammals. Uebbing S; Kocher AA; Baumgartner M; Ji Y; Bai S; Xing X; Nottoli T; Noonan JP Mol Biol Evol; 2024 Oct; 41(10):. PubMed ID: 39302728 [TBL] [Abstract][Full Text] [Related]
17. Gene Regulatory Enhancers with Evolutionarily Conserved Activity Are More Pleiotropic than Those with Species-Specific Activity. Fish A; Chen L; Capra JA Genome Biol Evol; 2017 Oct; 9(10):2615-2625. PubMed ID: 28985297 [TBL] [Abstract][Full Text] [Related]
18. Topology of mammalian developmental enhancers and their regulatory landscapes. de Laat W; Duboule D Nature; 2013 Oct; 502(7472):499-506. PubMed ID: 24153303 [TBL] [Abstract][Full Text] [Related]
19. Inferring mammalian tissue-specific regulatory conservation by predicting tissue-specific differences in open chromatin. Kaplow IM; Schäffer DE; Wirthlin ME; Lawler AJ; Brown AR; Kleyman M; Pfenning AR BMC Genomics; 2022 Apr; 23(1):291. PubMed ID: 35410163 [TBL] [Abstract][Full Text] [Related]
20. The life history of retrocopies illuminates the evolution of new mammalian genes. Carelli FN; Hayakawa T; Go Y; Imai H; Warnefors M; Kaessmann H Genome Res; 2016 Mar; 26(3):301-14. PubMed ID: 26728716 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]