670 related articles for article (PubMed ID: 25637560)
1. Omics Pipe: a community-based framework for reproducible multi-omics data analysis.
Fisch KM; Meißner T; Gioia L; Ducom JC; Carland TM; Loguercio S; Su AI
Bioinformatics; 2015 Jun; 31(11):1724-8. PubMed ID: 25637560
[TBL] [Abstract][Full Text] [Related]
2. svist4get: a simple visualization tool for genomic tracks from sequencing experiments.
Egorov AA; Sakharova EA; Anisimova AS; Dmitriev SE; Gladyshev VN; Kulakovskiy IV
BMC Bioinformatics; 2019 Mar; 20(1):113. PubMed ID: 30841857
[TBL] [Abstract][Full Text] [Related]
3. NGS-pipe: a flexible, easily extendable and highly configurable framework for NGS analysis.
Singer J; Ruscheweyh HJ; Hofmann AL; Thurnherr T; Singer F; Toussaint NC; Ng CKY; Piscuoglio S; Beisel C; Christofori G; Dummer R; Hall MN; Krek W; Levesque MP; Manz MG; Moch H; Papassotiropoulos A; Stekhoven DJ; Wild P; Wüst T; Rinn B; Beerenwinkel N
Bioinformatics; 2018 Jan; 34(1):107-108. PubMed ID: 28968639
[TBL] [Abstract][Full Text] [Related]
4. HTSeq--a Python framework to work with high-throughput sequencing data.
Anders S; Pyl PT; Huber W
Bioinformatics; 2015 Jan; 31(2):166-9. PubMed ID: 25260700
[TBL] [Abstract][Full Text] [Related]
5. SparkSeq: fast, scalable and cloud-ready tool for the interactive genomic data analysis with nucleotide precision.
Wiewiórka MS; Messina A; Pacholewska A; Maffioletti S; Gawrysiak P; Okoniewski MJ
Bioinformatics; 2014 Sep; 30(18):2652-3. PubMed ID: 24845651
[TBL] [Abstract][Full Text] [Related]
6. FindIT2: an R/Bioconductor package to identify influential transcription factor and targets based on multi-omics data.
Shang GD; Xu ZG; Wan MC; Wang FX; Wang JW
BMC Genomics; 2022 Apr; 23(Suppl 1):272. PubMed ID: 35392802
[TBL] [Abstract][Full Text] [Related]
7. TCGA Expedition: A Data Acquisition and Management System for TCGA Data.
Chandran UR; Medvedeva OP; Barmada MM; Blood PD; Chakka A; Luthra S; Ferreira A; Wong KF; Lee AV; Zhang Z; Budden R; Scott JR; Berndt A; Berg JM; Jacobson RS
PLoS One; 2016; 11(10):e0165395. PubMed ID: 27788220
[TBL] [Abstract][Full Text] [Related]
8. Launching genomics into the cloud: deployment of Mercury, a next generation sequence analysis pipeline.
Reid JG; Carroll A; Veeraraghavan N; Dahdouli M; Sundquist A; English A; Bainbridge M; White S; Salerno W; Buhay C; Yu F; Muzny D; Daly R; Duyk G; Gibbs RA; Boerwinkle E
BMC Bioinformatics; 2014 Jan; 15():30. PubMed ID: 24475911
[TBL] [Abstract][Full Text] [Related]
9. BioVLAB-mCpG-SNP-EXPRESS: A system for multi-level and multi-perspective analysis and exploration of DNA methylation, sequence variation (SNPs), and gene expression from multi-omics data.
Chae H; Lee S; Seo S; Jung D; Chang H; Nephew KP; Kim S
Methods; 2016 Dec; 111():64-71. PubMed ID: 27477210
[TBL] [Abstract][Full Text] [Related]
10. The ReproGenomics Viewer: a multi-omics and cross-species resource compatible with single-cell studies for the reproductive science community.
Darde TA; Lecluze E; Lardenois A; Stévant I; Alary N; Tüttelmann F; Collin O; Nef S; Jégou B; Rolland AD; Chalmel F
Bioinformatics; 2019 Sep; 35(17):3133-3139. PubMed ID: 30668675
[TBL] [Abstract][Full Text] [Related]
11. HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data.
Baheti S; Tang X; O'Brien DR; Chia N; Roberts LR; Nelson H; Boughey JC; Wang L; Goetz MP; Kocher JA; Kalari KR
BMC Bioinformatics; 2018 Jul; 19(1):271. PubMed ID: 30016933
[TBL] [Abstract][Full Text] [Related]
12. Multi Locus View: an extensible web-based tool for the analysis of genomic data.
Sergeant MJ; Hughes JR; Hentges L; Lunter G; Downes DJ; Taylor S
Commun Biol; 2021 May; 4(1):623. PubMed ID: 34035422
[TBL] [Abstract][Full Text] [Related]
13. Rail-dbGaP: analyzing dbGaP-protected data in the cloud with Amazon Elastic MapReduce.
Nellore A; Wilks C; Hansen KD; Leek JT; Langmead B
Bioinformatics; 2016 Aug; 32(16):2551-3. PubMed ID: 27153614
[TBL] [Abstract][Full Text] [Related]
14. PIPE-CLIP: a comprehensive online tool for CLIP-seq data analysis.
Chen B; Yun J; Kim MS; Mendell JT; Xie Y
Genome Biol; 2014 Jan; 15(1):R18. PubMed ID: 24451213
[TBL] [Abstract][Full Text] [Related]
15. Integrated genome browser: visual analytics platform for genomics.
Freese NH; Norris DC; Loraine AE
Bioinformatics; 2016 Jul; 32(14):2089-95. PubMed ID: 27153568
[TBL] [Abstract][Full Text] [Related]
16. OncoRep: an n-of-1 reporting tool to support genome-guided treatment for breast cancer patients using RNA-sequencing.
Meißner T; Fisch KM; Gioia L; Su AI
BMC Med Genomics; 2015 May; 8():24. PubMed ID: 25989980
[TBL] [Abstract][Full Text] [Related]
17. QuickRNASeq lifts large-scale RNA-seq data analyses to the next level of automation and interactive visualization.
Zhao S; Xi L; Quan J; Xi H; Zhang Y; von Schack D; Vincent M; Zhang B
BMC Genomics; 2016 Jan; 17():39. PubMed ID: 26747388
[TBL] [Abstract][Full Text] [Related]
18. SEXCMD: Development and validation of sex marker sequences for whole-exome/genome and RNA sequencing.
Jeong S; Kim J; Park W; Jeon H; Kim N
PLoS One; 2017; 12(9):e0184087. PubMed ID: 28886064
[TBL] [Abstract][Full Text] [Related]
19. smallWig: parallel compression of RNA-seq WIG files.
Wang Z; Weissman T; Milenkovic O
Bioinformatics; 2016 Jan; 32(2):173-80. PubMed ID: 26424856
[TBL] [Abstract][Full Text] [Related]
20. Rainbow: a tool for large-scale whole-genome sequencing data analysis using cloud computing.
Zhao S; Prenger K; Smith L; Messina T; Fan H; Jaeger E; Stephens S
BMC Genomics; 2013 Jun; 14():425. PubMed ID: 23802613
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]