These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

190 related articles for article (PubMed ID: 25643362)

  • 1. Metagenomic profiling of known and unknown microbes with microbeGPS.
    Lindner MS; Renard BY
    PLoS One; 2015; 10(2):e0117711. PubMed ID: 25643362
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MiCoP: microbial community profiling method for detecting viral and fungal organisms in metagenomic samples.
    LaPierre N; Mangul S; Alser M; Mandric I; Wu NC; Koslicki D; Eskin E
    BMC Genomics; 2019 Jun; 20(Suppl 5):423. PubMed ID: 31167634
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments.
    Ruscheweyh HJ; Milanese A; Paoli L; Karcher N; Clayssen Q; Keller MI; Wirbel J; Bork P; Mende DR; Zeller G; Sunagawa S
    Microbiome; 2022 Dec; 10(1):212. PubMed ID: 36464731
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Nonpareil: a redundancy-based approach to assess the level of coverage in metagenomic datasets.
    Rodriguez-R LM; Konstantinidis KT
    Bioinformatics; 2014 Mar; 30(5):629-35. PubMed ID: 24123672
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Where did you come from, where did you go: Refining metagenomic analysis tools for horizontal gene transfer characterisation.
    Seiler E; Trappe K; Renard BY
    PLoS Comput Biol; 2019 Jul; 15(7):e1007208. PubMed ID: 31335917
    [TBL] [Abstract][Full Text] [Related]  

  • 6. ReprDB and panDB: minimalist databases with maximal microbial representation.
    Zhou W; Gay N; Oh J
    Microbiome; 2018 Jan; 6(1):15. PubMed ID: 29347966
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Massive metagenomic data analysis using abundance-based machine learning.
    Harris ZN; Dhungel E; Mosior M; Ahn TH
    Biol Direct; 2019 Aug; 14(1):12. PubMed ID: 31370905
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Genometa--a fast and accurate classifier for short metagenomic shotgun reads.
    Davenport CF; Neugebauer J; Beckmann N; Friedrich B; Kameri B; Kokott S; Paetow M; Siekmann B; Wieding-Drewes M; Wienhöfer M; Wolf S; Tümmler B; Ahlers V; Sprengel F
    PLoS One; 2012; 7(8):e41224. PubMed ID: 22927906
    [TBL] [Abstract][Full Text] [Related]  

  • 9. MetaGeniE: characterizing human clinical samples using deep metagenomic sequencing.
    Rawat A; Engelthaler DM; Driebe EM; Keim P; Foster JT
    PLoS One; 2014; 9(11):e110915. PubMed ID: 25365329
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Reconstructing the genomic content of microbiome taxa through shotgun metagenomic deconvolution.
    Carr R; Shen-Orr SS; Borenstein E
    PLoS Comput Biol; 2013; 9(10):e1003292. PubMed ID: 24146609
    [TBL] [Abstract][Full Text] [Related]  

  • 11. VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing.
    Mori H; Maruyama T; Yano M; Yamada T; Kurokawa K
    BMC Syst Biol; 2018 Mar; 12(Suppl 2):30. PubMed ID: 29560821
    [TBL] [Abstract][Full Text] [Related]  

  • 12. TIPP2: metagenomic taxonomic profiling using phylogenetic markers.
    Shah N; Molloy EK; Pop M; Warnow T
    Bioinformatics; 2021 Jul; 37(13):1839-1845. PubMed ID: 33471121
    [TBL] [Abstract][Full Text] [Related]  

  • 13. HPMCD: the database of human microbial communities from metagenomic datasets and microbial reference genomes.
    Forster SC; Browne HP; Kumar N; Hunt M; Denise H; Mitchell A; Finn RD; Lawley TD
    Nucleic Acids Res; 2016 Jan; 44(D1):D604-9. PubMed ID: 26578596
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Metalign: efficient alignment-based metagenomic profiling via containment min hash.
    LaPierre N; Alser M; Eskin E; Koslicki D; Mangul S
    Genome Biol; 2020 Sep; 21(1):242. PubMed ID: 32912225
    [TBL] [Abstract][Full Text] [Related]  

  • 15. An accurate and fast alignment-free method for profiling microbial communities.
    Pham DT; Gao S; Phan V
    J Bioinform Comput Biol; 2017 Jun; 15(3):1740001. PubMed ID: 28345370
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Clustering metagenomic sequences with interpolated Markov models.
    Kelley DR; Salzberg SL
    BMC Bioinformatics; 2010 Nov; 11():544. PubMed ID: 21044341
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets.
    Portik DM; Brown CT; Pierce-Ward NT
    BMC Bioinformatics; 2022 Dec; 23(1):541. PubMed ID: 36513983
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Accurate genome relative abundance estimation for closely related species in a metagenomic sample.
    Sohn MB; An L; Pookhao N; Li Q
    BMC Bioinformatics; 2014 Jul; 15(1):242. PubMed ID: 25027647
    [TBL] [Abstract][Full Text] [Related]  

  • 19. MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun metagenomic data.
    Plaza Oñate F; Le Chatelier E; Almeida M; Cervino ACL; Gauthier F; Magoulès F; Ehrlich SD; Pichaud M
    Bioinformatics; 2019 May; 35(9):1544-1552. PubMed ID: 30252023
    [TBL] [Abstract][Full Text] [Related]  

  • 20. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
    Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
    Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.