These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

314 related articles for article (PubMed ID: 25648531)

  • 21. Application of non-canonical crosslinking amino acids to study protein-protein interactions in live cells.
    Coin I
    Curr Opin Chem Biol; 2018 Oct; 46():156-163. PubMed ID: 30077876
    [TBL] [Abstract][Full Text] [Related]  

  • 22. An Open Data Format for Visualization and Analysis of Cross-Linked Mass Spectrometry Results.
    Hoopmann MR; Mendoza L; Deutsch EW; Shteynberg D; Moritz RL
    J Am Soc Mass Spectrom; 2016 Nov; 27(11):1728-1734. PubMed ID: 27469004
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Identification of the template-binding cleft of T7 RNA polymerase as the site for promoter binding by photochemical cross-linking with psoralen.
    Sastry SS
    Biochemistry; 1996 Oct; 35(42):13519-30. PubMed ID: 8885831
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Cross-ID: Analysis and Visualization of Complex XL-MS-Driven Protein Interaction Networks.
    de Graaf SC; Klykov O; van den Toorn H; Scheltema RA
    J Proteome Res; 2019 Feb; 18(2):642-651. PubMed ID: 30575379
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Xlink Analyzer: software for analysis and visualization of cross-linking data in the context of three-dimensional structures.
    Kosinski J; von Appen A; Ori A; Karius K; Müller CW; Beck M
    J Struct Biol; 2015 Mar; 189(3):177-83. PubMed ID: 25661704
    [TBL] [Abstract][Full Text] [Related]  

  • 26. SIM-XL: A powerful and user-friendly tool for peptide cross-linking analysis.
    Lima DB; de Lima TB; Balbuena TS; Neves-Ferreira AGC; Barbosa VC; Gozzo FC; Carvalho PC
    J Proteomics; 2015 Nov; 129():51-55. PubMed ID: 25638023
    [TBL] [Abstract][Full Text] [Related]  

  • 27. In planta chemical cross-linking and mass spectrometry analysis of protein structure and interaction in Arabidopsis.
    Zhu X; Yu F; Yang Z; Liu S; Dai C; Lu X; Liu C; Yu W; Li N
    Proteomics; 2016 Jul; 16(13):1915-27. PubMed ID: 27198063
    [TBL] [Abstract][Full Text] [Related]  

  • 28. High Confidence Identification of Cross-Linked Peptides by an Enrichment-Based Dual Cleavable Cross-Linking Technology and Data Analysis tool Cleave-XL.
    Chakrabarty JK; Sadananda SC; Bhat A; Naik AJ; Ostwal DV; Chowdhury SM
    J Am Soc Mass Spectrom; 2020 Feb; 31(2):173-182. PubMed ID: 32031390
    [TBL] [Abstract][Full Text] [Related]  

  • 29. ProXL (Protein Cross-Linking Database): A Platform for Analysis, Visualization, and Sharing of Protein Cross-Linking Mass Spectrometry Data.
    Riffle M; Jaschob D; Zelter A; Davis TN
    J Proteome Res; 2016 Aug; 15(8):2863-70. PubMed ID: 27302480
    [TBL] [Abstract][Full Text] [Related]  

  • 30. XLmap: an R package to visualize and score protein structure models based on sites of protein cross-linking.
    Schweppe DK; Chavez JD; Bruce JE
    Bioinformatics; 2016 Jan; 32(2):306-8. PubMed ID: 26411867
    [TBL] [Abstract][Full Text] [Related]  

  • 31. An integrated mass spectrometry-based proteomic approach: quantitative analysis of tandem affinity-purified in vivo cross-linked protein complexes (QTAX) to decipher the 26 S proteasome-interacting network.
    Guerrero C; Tagwerker C; Kaiser P; Huang L
    Mol Cell Proteomics; 2006 Feb; 5(2):366-78. PubMed ID: 16284124
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Gobe: an interactive, web-based tool for comparative genomic visualization.
    Pedersen BS; Tang H; Freeling M
    Bioinformatics; 2011 Apr; 27(7):1015-6. PubMed ID: 21296748
    [TBL] [Abstract][Full Text] [Related]  

  • 33. PDV: an integrative proteomics data viewer.
    Li K; Vaudel M; Zhang B; Ren Y; Wen B
    Bioinformatics; 2019 Apr; 35(7):1249-1251. PubMed ID: 30169737
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Interactive network visualization in Jupyter notebooks: visJS2jupyter.
    Rosenthal SB; Len J; Webster M; Gary A; Birmingham A; Fisch KM
    Bioinformatics; 2018 Jan; 34(1):126-128. PubMed ID: 28968701
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Extending the cross-linking/mass spectrometry strategy: Facile incorporation of photo-activatable amino acids into the model protein calmodulin in Escherichia coli cells.
    Piotrowski C; Ihling CH; Sinz A
    Methods; 2015 Nov; 89():121-7. PubMed ID: 25726908
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Advances in protein complex analysis by chemical cross-linking coupled with mass spectrometry (CXMS) and bioinformatics.
    Tran BQ; Goodlett DR; Goo YA
    Biochim Biophys Acta; 2016 Jan; 1864(1):123-9. PubMed ID: 26025770
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Supramolecular organization of the α121-α565 collagen IV network.
    Robertson WE; Rose KL; Hudson BG; Vanacore RM
    J Biol Chem; 2014 Sep; 289(37):25601-10. PubMed ID: 25006246
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Identification of S-hydroxylysyl-methionine as the covalent cross-link of the noncollagenous (NC1) hexamer of the alpha1alpha1alpha2 collagen IV network: a role for the post-translational modification of lysine 211 to hydroxylysine 211 in hexamer assembly.
    Vanacore RM; Friedman DB; Ham AJ; Sundaramoorthy M; Hudson BG
    J Biol Chem; 2005 Aug; 280(32):29300-10. PubMed ID: 15951440
    [TBL] [Abstract][Full Text] [Related]  

  • 39. ndexr-an R package to interface with the network data exchange.
    Auer F; Hammoud Z; Ishkin A; Pratt D; Ideker T; Kramer F
    Bioinformatics; 2018 Feb; 34(4):716-717. PubMed ID: 29087446
    [TBL] [Abstract][Full Text] [Related]  

  • 40. VisioProt-MS: interactive 2D maps from intact protein mass spectrometry.
    Locard-Paulet M; Parra J; Albigot R; Mouton-Barbosa E; Bardi L; Burlet-Schiltz O; Marcoux J
    Bioinformatics; 2019 Feb; 35(4):679-681. PubMed ID: 30084957
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 16.