These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
130 related articles for article (PubMed ID: 25653145)
1. From the static interactome to dynamic protein complexes: Three challenges. Yong CH; Wong L J Bioinform Comput Biol; 2015 Apr; 13(2):1571001. PubMed ID: 25653145 [TBL] [Abstract][Full Text] [Related]
2. Prediction of problematic complexes from PPI networks: sparse, embedded, and small complexes. Yong CH; Wong L Biol Direct; 2015 Aug; 10():40. PubMed ID: 26231465 [TBL] [Abstract][Full Text] [Related]
3. From Function to Interaction: A New Paradigm for Accurately Predicting Protein Complexes Based on Protein-to-Protein Interaction Networks. Xu B; Guan J IEEE/ACM Trans Comput Biol Bioinform; 2014; 11(4):616-27. PubMed ID: 26356332 [TBL] [Abstract][Full Text] [Related]
4. Evaluation of clustering algorithms for protein-protein interaction networks. Brohée S; van Helden J BMC Bioinformatics; 2006 Nov; 7():488. PubMed ID: 17087821 [TBL] [Abstract][Full Text] [Related]
5. Predicting protein complexes from weighted protein-protein interaction graphs with a novel unsupervised methodology: Evolutionary enhanced Markov clustering. Theofilatos K; Pavlopoulou N; Papasavvas C; Likothanassis S; Dimitrakopoulos C; Georgopoulos E; Moschopoulos C; Mavroudi S Artif Intell Med; 2015 Mar; 63(3):181-9. PubMed ID: 25765008 [TBL] [Abstract][Full Text] [Related]
6. Identifying protein complexes and functional modules--from static PPI networks to dynamic PPI networks. Chen B; Fan W; Liu J; Wu FX Brief Bioinform; 2014 Mar; 15(2):177-94. PubMed ID: 23780996 [TBL] [Abstract][Full Text] [Related]
7. Identifying protein complex by integrating characteristic of core-attachment into dynamic PPI network. Shen X; Yi L; Jiang X; He T; Yang J; Xie W; Hu P; Hu X PLoS One; 2017; 12(10):e0186134. PubMed ID: 29045465 [TBL] [Abstract][Full Text] [Related]
8. A degree-distribution based hierarchical agglomerative clustering algorithm for protein complexes identification. Yu L; Gao L; Li K; Zhao Y; Chiu DK Comput Biol Chem; 2011 Oct; 35(5):298-307. PubMed ID: 22000801 [TBL] [Abstract][Full Text] [Related]
9. Protein complex prediction with RNSC. King AD; Pržulj N; Jurisica I Methods Mol Biol; 2012; 804():297-312. PubMed ID: 22144160 [TBL] [Abstract][Full Text] [Related]
10. An effective approach to detecting both small and large complexes from protein-protein interaction networks. Xu B; Wang Y; Wang Z; Zhou J; Zhou S; Guan J BMC Bioinformatics; 2017 Oct; 18(Suppl 12):419. PubMed ID: 29072136 [TBL] [Abstract][Full Text] [Related]
11. Construction of dynamic probabilistic protein interaction networks for protein complex identification. Zhang Y; Lin H; Yang Z; Wang J BMC Bioinformatics; 2016 Apr; 17(1):186. PubMed ID: 27117946 [TBL] [Abstract][Full Text] [Related]
12. Predicting overlapping protein complexes from weighted protein interaction graphs by gradually expanding dense neighborhoods. Dimitrakopoulos C; Theofilatos K; Pegkas A; Likothanassis S; Mavroudi S Artif Intell Med; 2016 Jul; 71():62-9. PubMed ID: 27506132 [TBL] [Abstract][Full Text] [Related]
13. Protein Complexes Prediction Method Based on Core-Attachment Structure and Functional Annotations. Li B; Liao B Int J Mol Sci; 2017 Sep; 18(9):. PubMed ID: 28878201 [TBL] [Abstract][Full Text] [Related]
14. A survey of computational methods for protein complex prediction from protein interaction networks. Srihari S; Leong HW J Bioinform Comput Biol; 2013 Apr; 11(2):1230002. PubMed ID: 23600810 [TBL] [Abstract][Full Text] [Related]
15. A method for predicting protein complex in dynamic PPI networks. Zhang Y; Lin H; Yang Z; Wang J; Liu Y; Sang S BMC Bioinformatics; 2016 Jul; 17 Suppl 7(Suppl 7):229. PubMed ID: 27454775 [TBL] [Abstract][Full Text] [Related]
16. Identifying hierarchical and overlapping protein complexes based on essential protein-protein interactions and "seed-expanding" method. Ren J; Zhou W; Wang J Biomed Res Int; 2014; 2014():838714. PubMed ID: 25143945 [TBL] [Abstract][Full Text] [Related]
17. Identification of protein complexes by integrating multiple alignment of protein interaction networks. Ma CY; Chen YP; Berger B; Liao CS Bioinformatics; 2017 Jun; 33(11):1681-1688. PubMed ID: 28130237 [TBL] [Abstract][Full Text] [Related]
18. Integrating network topology, gene expression data and GO annotation information for protein complex prediction. Zhang W; Xu J; Li Y; Zou X J Bioinform Comput Biol; 2019 Feb; 17(1):1950001. PubMed ID: 30803297 [TBL] [Abstract][Full Text] [Related]
19. Neighbor affinity based algorithm for discovering temporal protein complex from dynamic PPI network. Shen X; Yi L; Jiang X; Zhao Y; Hu X; He T; Yang J Methods; 2016 Nov; 110():90-96. PubMed ID: 27320204 [TBL] [Abstract][Full Text] [Related]
20. Evolutionary Graph Clustering for Protein Complex Identification. He T; Chan KCC IEEE/ACM Trans Comput Biol Bioinform; 2018; 15(3):892-904. PubMed ID: 28029628 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]