321 related articles for article (PubMed ID: 25667941)
1. Lessons in de novo peptide sequencing by tandem mass spectrometry.
Medzihradszky KF; Chalkley RJ
Mass Spectrom Rev; 2015; 34(1):43-63. PubMed ID: 25667941
[TBL] [Abstract][Full Text] [Related]
2. pNovo: de novo peptide sequencing and identification using HCD spectra.
Chi H; Sun RX; Yang B; Song CQ; Wang LH; Liu C; Fu Y; Yuan ZF; Wang HP; He SM; Dong MQ
J Proteome Res; 2010 May; 9(5):2713-24. PubMed ID: 20329752
[TBL] [Abstract][Full Text] [Related]
3. Ultrahigh-resolution Fourier transform ion cyclotron resonance mass spectrometry and tandem mass spectrometry for peptide de novo amino acid sequencing for a seven-protein mixture by paired single-residue transposed Lys-N and Lys-C digestion.
Guan X; Brownstein NC; Young NL; Marshall AG
Rapid Commun Mass Spectrom; 2017 Jan; 31(2):207-217. PubMed ID: 27813191
[TBL] [Abstract][Full Text] [Related]
4. Recent Developments in Computational Methods for De Novo Peptide Sequencing from Tandem Mass Spectrometry (MS/MS).
Yan Y; Kusalik AJ; Wu FX
Protein Pept Lett; 2015; 22(11):983-91. PubMed ID: 26295161
[TBL] [Abstract][Full Text] [Related]
5. Paired single residue-transposed Lys-N and Lys-C digestions for label-free identification of N-terminal and C-terminal MS/MS peptide product ions: ultrahigh resolution Fourier transform ion cyclotron resonance mass spectrometry and tandem mass spectrometry for peptide de novo sequencing.
Brownstein NC; Guan X; Mao Y; Zhang Q; DiMaggio PA; Xia Q; Zhang L; Marshall AG; Young NL
Rapid Commun Mass Spectrom; 2015 Apr; 29(7):659-66. PubMed ID: 26212284
[TBL] [Abstract][Full Text] [Related]
6. De novo peptide sequencing using CID and HCD spectra pairs.
Yan Y; Kusalik AJ; Wu FX
Proteomics; 2016 Oct; 16(20):2615-2624. PubMed ID: 27402425
[TBL] [Abstract][Full Text] [Related]
7. Evaluating de novo sequencing in proteomics: already an accurate alternative to database-driven peptide identification?
Muth T; Renard BY
Brief Bioinform; 2018 Sep; 19(5):954-970. PubMed ID: 28369237
[TBL] [Abstract][Full Text] [Related]
8. Comprehensive de Novo Peptide Sequencing from MS/MS Pairs Generated through Complementary Collision Induced Dissociation and 351 nm Ultraviolet Photodissociation.
Horton AP; Robotham SA; Cannon JR; Holden DD; Marcotte EM; Brodbelt JS
Anal Chem; 2017 Mar; 89(6):3747-3753. PubMed ID: 28234449
[TBL] [Abstract][Full Text] [Related]
9. High-confidence de novo peptide sequencing using positive charge derivatization and tandem MS spectra merging.
An M; Zou X; Wang Q; Zhao X; Wu J; Xu LM; Shen HY; Xiao X; He D; Ji J
Anal Chem; 2013 May; 85(9):4530-7. PubMed ID: 23536960
[TBL] [Abstract][Full Text] [Related]
10. Interpretation of collision-induced fragmentation tandem mass spectra of posttranslationally modified peptides.
Bunkenborg J; Matthiesen R
Methods Mol Biol; 2007; 367():169-94. PubMed ID: 17185776
[TBL] [Abstract][Full Text] [Related]
11. Novor: real-time peptide de novo sequencing software.
Ma B
J Am Soc Mass Spectrom; 2015 Nov; 26(11):1885-94. PubMed ID: 26122521
[TBL] [Abstract][Full Text] [Related]
12. LTQ Orbitrap Velos in routine de novo sequencing of non-tryptic skin peptides from the frog Rana latastei with traditional and reliable manual spectra interpretation.
Samgina TY; Tolpina MD; Trebse P; Torkar G; Artemenko KA; Bergquist J; Lebedev AT
Rapid Commun Mass Spectrom; 2016 Jan; 30(2):265-76. PubMed ID: 27071218
[TBL] [Abstract][Full Text] [Related]
13. De novo peptide sequencing by tandem MS using complementary CID and electron transfer dissociation.
Bertsch A; Leinenbach A; Pervukhin A; Lubeck M; Hartmer R; Baessmann C; Elnakady YA; Müller R; Böcker S; Huber CG; Kohlbacher O
Electrophoresis; 2009 Nov; 30(21):3736-47. PubMed ID: 19862751
[TBL] [Abstract][Full Text] [Related]
14. Protein identification by tandem mass spectrometry and sequence database searching.
Nesvizhskii AI
Methods Mol Biol; 2007; 367():87-119. PubMed ID: 17185772
[TBL] [Abstract][Full Text] [Related]
15. Combinatorial Labeling Method for Improving Peptide Fragmentation in Mass Spectrometry.
Kuchibhotla B; Kola SR; Medicherla JV; Cherukuvada SV; Dhople VM; Nalam MR
J Am Soc Mass Spectrom; 2017 Jun; 28(6):1216-1226. PubMed ID: 28349438
[TBL] [Abstract][Full Text] [Related]
16. De novo peptide sequencing via manual interpretation of MS/MS spectra.
Addona T; Clauser K
Curr Protoc Protein Sci; 2002 May; Chapter 16():Unit 16.11. PubMed ID: 18429223
[TBL] [Abstract][Full Text] [Related]
17. Automated interpretation of low-energy collision-induced dissociation spectra by SeqMS, a software aid for de novo sequencing by tandem mass spectrometry.
Fernandez-de-Cossio J; Gonzalez J; Satomi Y; Shima T; Okumura N; Besada V; Betancourt L; Padron G; Shimonishi Y; Takao T
Electrophoresis; 2000 May; 21(9):1694-9. PubMed ID: 10870956
[TBL] [Abstract][Full Text] [Related]
18. Mass spectrometric de novo sequencing of natural non-tryptic peptides: comparing peculiarities of collision-induced dissociation (CID) and high energy collision dissociation (HCD).
Samgina TY; Vorontsov EA; Gorshkov VA; Artemenko KA; Zubarev RA; Lebedev AT
Rapid Commun Mass Spectrom; 2014 Dec; 28(23):2595-604. PubMed ID: 25366406
[TBL] [Abstract][Full Text] [Related]
19. Algorithms for the de novo sequencing of peptides from tandem mass spectra.
Allmer J
Expert Rev Proteomics; 2011 Oct; 8(5):645-57. PubMed ID: 21999834
[TBL] [Abstract][Full Text] [Related]
20. Multi-spectra peptide sequencing and its applications to multistage mass spectrometry.
Bandeira N; Olsen JV; Mann JV; Mann M; Pevzner PA
Bioinformatics; 2008 Jul; 24(13):i416-23. PubMed ID: 18785330
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
