These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

328 related articles for article (PubMed ID: 25670500)

  • 101. RosettaSurf-A surface-centric computational design approach.
    Scheck A; Rosset S; Defferrard M; Loukas A; Bonet J; Vandergheynst P; Correia BE
    PLoS Comput Biol; 2022 Mar; 18(3):e1009178. PubMed ID: 35294435
    [TBL] [Abstract][Full Text] [Related]  

  • 102. PB-GPT: An innovative GPT-based model for protein backbone generation.
    Min X; Liao Y; Chen X; Yang Q; Ying J; Zou J; Yang C; Zhang J; Ge S; Xia N
    Structure; 2024 Oct; 32(10):1820-1833.e5. PubMed ID: 39173620
    [TBL] [Abstract][Full Text] [Related]  

  • 103. Computational design of closely related proteins that adopt two well-defined but structurally divergent folds.
    Wei KY; Moschidi D; Bick MJ; Nerli S; McShan AC; Carter LP; Huang PS; Fletcher DA; Sgourakis NG; Boyken SE; Baker D
    Proc Natl Acad Sci U S A; 2020 Mar; 117(13):7208-7215. PubMed ID: 32188784
    [TBL] [Abstract][Full Text] [Related]  

  • 104. Toward real-world automated antibody design with combinatorial Bayesian optimization.
    Khan A; Cowen-Rivers AI; Grosnit A; Deik DG; Robert PA; Greiff V; Smorodina E; Rawat P; Akbar R; Dreczkowski K; Tutunov R; Bou-Ammar D; Wang J; Storkey A; Bou-Ammar H
    Cell Rep Methods; 2023 Jan; 3(1):100374. PubMed ID: 36814835
    [TBL] [Abstract][Full Text] [Related]  

  • 105. Protein loop structure prediction by community-based deep learning and its application to antibody CDR H3 loop modeling.
    Woo H; Kim Y; Seok C
    PLoS Comput Biol; 2024 Jun; 20(6):e1012239. PubMed ID: 38913733
    [TBL] [Abstract][Full Text] [Related]  

  • 106. De novo design of modular peptide-binding proteins by superhelical matching.
    Wu K; Bai H; Chang YT; Redler R; McNally KE; Sheffler W; Brunette TJ; Hicks DR; Morgan TE; Stevens TJ; Broerman A; Goreshnik I; DeWitt M; Chow CM; Shen Y; Stewart L; Derivery E; Silva DA; Bhabha G; Ekiert DC; Baker D
    Nature; 2023 Apr; 616(7957):581-589. PubMed ID: 37020023
    [TBL] [Abstract][Full Text] [Related]  

  • 107. Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies.
    Ruffolo JA; Chu LS; Mahajan SP; Gray JJ
    Nat Commun; 2023 Apr; 14(1):2389. PubMed ID: 37185622
    [TBL] [Abstract][Full Text] [Related]  

  • 108. Protein design and variant prediction using autoregressive generative models.
    Shin JE; Riesselman AJ; Kollasch AW; McMahon C; Simon E; Sander C; Manglik A; Kruse AC; Marks DS
    Nat Commun; 2021 Apr; 12(1):2403. PubMed ID: 33893299
    [TBL] [Abstract][Full Text] [Related]  

  • 109. Thoroughly sampling sequence space: large-scale protein design of structural ensembles.
    Larson SM; England JL; Desjarlais JR; Pande VS
    Protein Sci; 2002 Dec; 11(12):2804-13. PubMed ID: 12441379
    [TBL] [Abstract][Full Text] [Related]  

  • 110. Maintaining and Enhancing Diversity of Sampled Protein Conformations in Robotics-Inspired Methods.
    Abella JR; Moll M; Kavraki LE
    J Comput Biol; 2018 Jan; 25(1):3-20. PubMed ID: 29035572
    [TBL] [Abstract][Full Text] [Related]  

  • 111. Computational optimization of antibody humanness and stability by systematic energy-based ranking.
    Tennenhouse A; Khmelnitsky L; Khalaila R; Yeshaya N; Noronha A; Lindzen M; Makowski EK; Zaretsky I; Sirkis YF; Galon-Wolfenson Y; Tessier PM; Abramson J; Yarden Y; Fass D; Fleishman SJ
    Nat Biomed Eng; 2024 Jan; 8(1):30-44. PubMed ID: 37550425
    [TBL] [Abstract][Full Text] [Related]  

  • 112. Comparison of designed and randomly generated catalysts for simple chemical reactions.
    Kipnis Y; Baker D
    Protein Sci; 2012 Sep; 21(9):1388-95. PubMed ID: 22811380
    [TBL] [Abstract][Full Text] [Related]  

  • 113. Exploring the potential of structure-based deep learning approaches for T cell receptor design.
    Ribeiro-Filho HV; Jara GE; Guerra JVS; Cheung M; Felbinger NR; Pereira JGC; Pierce BG; Lopes-de-Oliveira PS
    PLoS Comput Biol; 2024 Sep; 20(9):e1012489. PubMed ID: 39348412
    [TBL] [Abstract][Full Text] [Related]  

  • 114. Scaffold Matcher: A CMA-ES based algorithm for identifying hotspot aligned peptidomimetic scaffolds.
    Claussen ER; Renfrew PD; Müller CL; Drew K
    Proteins; 2024 Mar; 92(3):343-355. PubMed ID: 37874196
    [TBL] [Abstract][Full Text] [Related]  

  • 115. Fast search algorithms for computational protein design.
    Traoré S; Roberts KE; Allouche D; Donald BR; André I; Schiex T; Barbe S
    J Comput Chem; 2016 May; 37(12):1048-58. PubMed ID: 26833706
    [TBL] [Abstract][Full Text] [Related]  

  • 116. Adding diverse noncanonical backbones to rosetta: enabling peptidomimetic design.
    Drew K; Renfrew PD; Craven TW; Butterfoss GL; Chou FC; Lyskov S; Bullock BN; Watkins A; Labonte JW; Pacella M; Kilambi KP; Leaver-Fay A; Kuhlman B; Gray JJ; Bradley P; Kirshenbaum K; Arora PS; Das R; Bonneau R
    PLoS One; 2013; 8(7):e67051. PubMed ID: 23869206
    [TBL] [Abstract][Full Text] [Related]  

  • 117. An integrative approach to protein sequence design through multiobjective optimization.
    Hong L; Kortemme T
    PLoS Comput Biol; 2024 Jul; 20(7):e1011953. PubMed ID: 38991035
    [TBL] [Abstract][Full Text] [Related]  

  • 118. Robust deep learning-based protein sequence design using ProteinMPNN.
    Dauparas J; Anishchenko I; Bennett N; Bai H; Ragotte RJ; Milles LF; Wicky BIM; Courbet A; de Haas RJ; Bethel N; Leung PJY; Huddy TF; Pellock S; Tischer D; Chan F; Koepnick B; Nguyen H; Kang A; Sankaran B; Bera AK; King NP; Baker D
    Science; 2022 Oct; 378(6615):49-56. PubMed ID: 36108050
    [TBL] [Abstract][Full Text] [Related]  

  • 119. Amino-acid site variability among natural and designed proteins.
    Jackson EL; Ollikainen N; Covert AW; Kortemme T; Wilke CO
    PeerJ; 2013; 1():e211. PubMed ID: 24255821
    [TBL] [Abstract][Full Text] [Related]  

  • 120. High-Throughput Ligand Discovery Reveals a Sitewise Gradient of Diversity in Broadly Evolved Hydrophilic Fibronectin Domains.
    Woldring DR; Holec PV; Zhou H; Hackel BJ
    PLoS One; 2015; 10(9):e0138956. PubMed ID: 26383268
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 17.