These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

237 related articles for article (PubMed ID: 25690415)

  • 1. Visualization of proteomics data using R and bioconductor.
    Gatto L; Breckels LM; Naake T; Gibb S
    Proteomics; 2015 Apr; 15(8):1375-89. PubMed ID: 25690415
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Viewing the proteome: how to visualize proteomics data?
    Oveland E; Muth T; Rapp E; Martens L; Berven FS; Barsnes H
    Proteomics; 2015 Apr; 15(8):1341-55. PubMed ID: 25504833
    [TBL] [Abstract][Full Text] [Related]  

  • 3. VESPA: software to facilitate genomic annotation of prokaryotic organisms through integration of proteomic and transcriptomic data.
    Peterson ES; McCue LA; Schrimpe-Rutledge AC; Jensen JL; Walker H; Kobold MA; Webb SR; Payne SH; Ansong C; Adkins JN; Cannon WR; Webb-Robertson BJ
    BMC Genomics; 2012 Apr; 13():131. PubMed ID: 22480257
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Visualization of LC-MS/MS proteomics data in MaxQuant.
    Tyanova S; Temu T; Carlson A; Sinitcyn P; Mann M; Cox J
    Proteomics; 2015 Apr; 15(8):1453-6. PubMed ID: 25644178
    [TBL] [Abstract][Full Text] [Related]  

  • 5. MSnbase-an R/Bioconductor package for isobaric tagged mass spectrometry data visualization, processing and quantitation.
    Gatto L; Lilley KS
    Bioinformatics; 2012 Jan; 28(2):288-9. PubMed ID: 22113085
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Efficient visualization of high-throughput targeted proteomics experiments: TAPIR.
    Röst HL; Rosenberger G; Aebersold R; Malmström L
    Bioinformatics; 2015 Jul; 31(14):2415-7. PubMed ID: 25788625
    [TBL] [Abstract][Full Text] [Related]  

  • 7. rTANDEM, an R/Bioconductor package for MS/MS protein identification.
    Fournier F; Joly Beauparlant C; Paradis R; Droit A
    Bioinformatics; 2014 Aug; 30(15):2233-4. PubMed ID: 24700319
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Proteomic feature maps: a new visualization approach in proteomics analysis.
    Giannopoulou EG; Garbis SD; Vlahou A; Kossida S; Lepouras G; Manolakos ES
    J Biomed Inform; 2009 Aug; 42(4):644-53. PubMed ID: 19535004
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Prequips--an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data.
    Gehlenborg N; Yan W; Lee IY; Yoo H; Nieselt K; Hwang D; Aebersold R; Hood L
    Bioinformatics; 2009 Mar; 25(5):682-3. PubMed ID: 19129212
    [TBL] [Abstract][Full Text] [Related]  

  • 10. MSnbase, Efficient and Elegant R-Based Processing and Visualization of Raw Mass Spectrometry Data.
    Gatto L; Gibb S; Rainer J
    J Proteome Res; 2021 Jan; 20(1):1063-1069. PubMed ID: 32902283
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Triplex: an R/Bioconductor package for identification and visualization of potential intramolecular triplex patterns in DNA sequences.
    Hon J; Martínek T; Rajdl K; Lexa M
    Bioinformatics; 2013 Aug; 29(15):1900-1. PubMed ID: 23709494
    [TBL] [Abstract][Full Text] [Related]  

  • 12. trackViewer: a Bioconductor package for interactive and integrative visualization of multi-omics data.
    Ou J; Zhu LJ
    Nat Methods; 2019 Jun; 16(6):453-454. PubMed ID: 31133757
    [No Abstract]   [Full Text] [Related]  

  • 13. ProtVista: visualization of protein sequence annotations.
    Watkins X; Garcia LJ; Pundir S; Martin MJ;
    Bioinformatics; 2017 Jul; 33(13):2040-2041. PubMed ID: 28334231
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Enabling proteomics discovery through visual analysis. The peptide permutation and protein prediction tool.
    Havre SL; Singhal M; Payne DA; Lipton MS; Webb-Robertson BJ
    IEEE Eng Med Biol Mag; 2005; 24(3):50-7. PubMed ID: 15971841
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Analysing proteomics identifications in the context of functional and structural protein annotation: integrating annotation using PICR, DAS, and BioMart.
    Jones P
    Methods Mol Biol; 2011; 696():107-21. PubMed ID: 21063944
    [TBL] [Abstract][Full Text] [Related]  

  • 16. LogViewer: a software tool to visualize quality control parameters to optimize proteomics experiments using Orbitrap and LTQ-FT mass spectrometers.
    Sweredoski MJ; Smith GT; Kalli A; Graham RL; Hess S
    J Biomol Tech; 2011 Dec; 22(4):122-6. PubMed ID: 22131886
    [TBL] [Abstract][Full Text] [Related]  

  • 17. PanViz: interactive visualization of the structure of functionally annotated pangenomes.
    Pedersen TL; Nookaew I; Wayne Ussery D; Månsson M
    Bioinformatics; 2017 Apr; 33(7):1081-1082. PubMed ID: 28057677
    [TBL] [Abstract][Full Text] [Related]  

  • 18. PloGO: plotting gene ontology annotation and abundance in multi-condition proteomics experiments.
    Pascovici D; Keighley T; Mirzaei M; Haynes PA; Cooke B
    Proteomics; 2012 Feb; 12(3):406-10. PubMed ID: 22213732
    [TBL] [Abstract][Full Text] [Related]  

  • 19. MSstatsQC 2.0: R/Bioconductor Package for Statistical Quality Control of Mass Spectrometry-Based Proteomics Experiments.
    Dogu E; Taheri SM; Olivella R; Marty F; Lienert I; Reiter L; Sabido E; Vitek O
    J Proteome Res; 2019 Feb; 18(2):678-686. PubMed ID: 30450913
    [TBL] [Abstract][Full Text] [Related]  

  • 20. mineXpert: Biological Mass Spectrometry Data Visualization and Mining with Full JavaScript Ability.
    Rusconi F
    J Proteome Res; 2019 May; 18(5):2254-2259. PubMed ID: 30950277
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.