214 related articles for article (PubMed ID: 25690900)
1. 2-Thiouracil deprived of thiocarbonyl function preferentially base pairs with guanine rather than adenine in RNA and DNA duplexes.
Sochacka E; Szczepanowski RH; Cypryk M; Sobczak M; Janicka M; Kraszewska K; Bartos P; Chwialkowska A; Nawrot B
Nucleic Acids Res; 2015 Mar; 43(5):2499-512. PubMed ID: 25690900
[TBL] [Abstract][Full Text] [Related]
2. Synthesis and properties of 2'-O-methyl-2-thiouridine and oligoribonucleotides containing 2'-O-methyl-2-thiouridine.
Shohda K; Okamoto I; Wada T; Seio K; Sekine M
Bioorg Med Chem Lett; 2000 Aug; 10(16):1795-8. PubMed ID: 10969970
[TBL] [Abstract][Full Text] [Related]
3. The influence of the C5 substituent on the 2-thiouridine desulfuration pathway and the conformational analysis of the resulting 4-pyrimidinone products.
Bartos P; Ebenryter-Olbinska K; Sochacka E; Nawrot B
Bioorg Med Chem; 2015 Sep; 23(17):5587-94. PubMed ID: 26254829
[TBL] [Abstract][Full Text] [Related]
4. Cytochrome c Catalyzes the Hydrogen Peroxide-Assisted Oxidative Desulfuration of 2-Thiouridines in Transfer RNAs.
Sierant M; Kulik K; Sochacka E; Szewczyk R; Sobczak M; Nawrot B
Chembiochem; 2018 Apr; 19(7):687-695. PubMed ID: 29287127
[TBL] [Abstract][Full Text] [Related]
5. Study of the base discrimination ability of DNA and 2'-O-methylated RNA oligomers containing 2-thiouracil bases towards complementary RNA or DNA strands and their application to single base mismatch detection.
Okamoto I; Seio K; Sekine M
Bioorg Med Chem; 2008 Jun; 16(11):6034-41. PubMed ID: 18487052
[TBL] [Abstract][Full Text] [Related]
6. Desulfuration of 2-thiouridine with hydrogen peroxide in the physiological pH range 6.6-7.6 is pH-dependent and results in two distinct products.
Sochacka E; Bartos P; Kraszewska K; Nawrot B
Bioorg Med Chem Lett; 2013 Nov; 23(21):5803-5. PubMed ID: 24064499
[TBL] [Abstract][Full Text] [Related]
7. A new route to 2'-O-alkyl-2-thiouridine derivatives via 4-O-protection of the uracil base and hybridization properties of oligonucleotides incorporating these modified nucleoside derivatives.
Okamoto I; Shohda K; Seio K; Sekine M
J Org Chem; 2003 Dec; 68(26):9971-82. PubMed ID: 14682690
[TBL] [Abstract][Full Text] [Related]
8. Thermodynamics of single mismatches in RNA duplexes.
Kierzek R; Burkard ME; Turner DH
Biochemistry; 1999 Oct; 38(43):14214-23. PubMed ID: 10571995
[TBL] [Abstract][Full Text] [Related]
9. Experimental and theoretical rationalization for the base pairing abilities of inosine, guanosine, adenosine, and their corresponding 8-oxo-7,8-dihydropurine, and 8-bromopurine analogues within A-form duplexes of RNA.
Skinner A; Yang CH; Hincks K; Wang H; Resendiz MJE
Biopolymers; 2020 Dec; 111(12):e23410. PubMed ID: 33216981
[TBL] [Abstract][Full Text] [Related]
10. RNA/DNA hybrid duplexes with identical nearest-neighbor base-pairs have identical stability.
Sugimoto N; Katoh M; Nakano S; Ohmichi T; Sasaki M
FEBS Lett; 1994 Oct; 354(1):74-8. PubMed ID: 7525350
[TBL] [Abstract][Full Text] [Related]
11. An efficient approach for conversion of 5-substituted 2-thiouridines built in RNA oligomers into corresponding desulfured 4-pyrimidinone products.
Chwialkowska A; Wielgus E; Leszczynska G; Sobczak M; Mikolajczyk B; Sochacka E; Nawrot B
Bioorg Med Chem Lett; 2015 Aug; 25(16):3100-4. PubMed ID: 26112441
[TBL] [Abstract][Full Text] [Related]
12. Thermodynamics-structure relationship of single mismatches in RNA/DNA duplexes.
Sugimoto N; Nakano M; Nakano S
Biochemistry; 2000 Sep; 39(37):11270-81. PubMed ID: 10985772
[TBL] [Abstract][Full Text] [Related]
13. Thermodynamics of RNA-RNA duplexes with 2- or 4-thiouridines: implications for antisense design and targeting a group I intron.
Testa SM; Disney MD; Turner DH; Kierzek R
Biochemistry; 1999 Dec; 38(50):16655-62. PubMed ID: 10600128
[TBL] [Abstract][Full Text] [Related]
14. The 2-thiouridine unit in the RNA strand is desulfured predominantly to 4-pyrimidinone nucleoside under in vitro oxidative stress conditions.
Sochacka E; Kraszewska K; Sochacki M; Sobczak M; Janicka M; Nawrot B
Chem Commun (Camb); 2011 May; 47(17):4914-6. PubMed ID: 21431224
[TBL] [Abstract][Full Text] [Related]
15. Synthesis and base pairing properties of DNA-RNA heteroduplex containing 5-hydroxyuridine.
Cui S; Kim YH; Jin CH; Kim SK; Rhee MH; Kwon OS; Moon BJ
BMB Rep; 2009 Jun; 42(6):373-9. PubMed ID: 19558797
[TBL] [Abstract][Full Text] [Related]
16. DNA . RNA heteroduplex containing 8-oxo-7,8-dihydroguanosine: base pairing, structures, and thermodynamic stability.
Kim SK; Lee SH; Kwon OS; Moon BJ
J Biochem Mol Biol; 2004 Nov; 37(6):657-62. PubMed ID: 15607023
[TBL] [Abstract][Full Text] [Related]
17. Hybridization Properties of RNA Containing 8-Methoxyguanosine and 8-Benzyloxyguanosine.
Baranowski DS; Kotkowiak W; Kierzek R; Pasternak A
PLoS One; 2015; 10(9):e0137674. PubMed ID: 26353054
[TBL] [Abstract][Full Text] [Related]
18. Crystal structure studies of RNA duplexes containing s(2)U:A and s(2)U:U base pairs.
Sheng J; Larsen A; Heuberger BD; Blain JC; Szostak JW
J Am Chem Soc; 2014 Oct; 136(39):13916-24. PubMed ID: 25188906
[TBL] [Abstract][Full Text] [Related]
19. Stabilizing contributions of sulfur-modified nucleotides: crystal structure of a DNA duplex with 2'-O-[2-(methoxy)ethyl]-2-thiothymidines.
Diop-Frimpong B; Prakash TP; Rajeev KG; Manoharan M; Egli M
Nucleic Acids Res; 2005; 33(16):5297-307. PubMed ID: 16170156
[TBL] [Abstract][Full Text] [Related]
20. Structural effects of hypermodified nucleosides in the Escherichia coli and human tRNALys anticodon loop: the effect of nucleosides s2U, mcm5U, mcm5s2U, mnm5s2U, t6A, and ms2t6A.
Durant PC; Bajji AC; Sundaram M; Kumar RK; Davis DR
Biochemistry; 2005 Jun; 44(22):8078-89. PubMed ID: 15924427
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]