110 related articles for article (PubMed ID: 25711833)
1. Rock, paper, scissors: harnessing complementarity in ortholog detection methods improves comparative genomic inference.
Maher MC; Hernandez RD
G3 (Bethesda); 2015 Feb; 5(4):629-38. PubMed ID: 25711833
[TBL] [Abstract][Full Text] [Related]
2. Multiple alignment of genomic sequences using CHAOS, DIALIGN and ABC.
Pöhler D; Werner N; Steinkamp R; Morgenstern B
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W532-4. PubMed ID: 15980528
[TBL] [Abstract][Full Text] [Related]
3. OrthoMaM v8: a database of orthologous exons and coding sequences for comparative genomics in mammals.
Douzery EJ; Scornavacca C; Romiguier J; Belkhir K; Galtier N; Delsuc F; Ranwez V
Mol Biol Evol; 2014 Jul; 31(7):1923-8. PubMed ID: 24723423
[TBL] [Abstract][Full Text] [Related]
4. PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny.
Siddharthan R; Siggia ED; van Nimwegen E
PLoS Comput Biol; 2005 Dec; 1(7):e67. PubMed ID: 16477324
[TBL] [Abstract][Full Text] [Related]
5. Dcode.org anthology of comparative genomic tools.
Loots GG; Ovcharenko I
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W56-64. PubMed ID: 15980535
[TBL] [Abstract][Full Text] [Related]
6. Manipulating multiple sequence alignments via MaM and WebMaM.
Alkan C; Tüzün E; Buard J; Lethiec F; Eichler EE; Bailey JA; Sahinalp SC
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W295-8. PubMed ID: 15980474
[TBL] [Abstract][Full Text] [Related]
7. transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.
Bininda-Emonds OR
BMC Bioinformatics; 2005 Jun; 6():156. PubMed ID: 15969769
[TBL] [Abstract][Full Text] [Related]
8. GPAC-genome presence/absence compiler: a web application to comparatively visualize multiple genome-level changes.
Noll A; Grundmann N; Churakov G; Brosius J; Makałowski W; Schmitz J
Mol Biol Evol; 2015 Jan; 32(1):275-86. PubMed ID: 25261406
[TBL] [Abstract][Full Text] [Related]
9. JCoDA: a tool for detecting evolutionary selection.
Steinway SN; Dannenfelser R; Laucius CD; Hayes JE; Nayak S
BMC Bioinformatics; 2010 May; 11():284. PubMed ID: 20507581
[TBL] [Abstract][Full Text] [Related]
10. The ASAP II database: analysis and comparative genomics of alternative splicing in 15 animal species.
Kim N; Alekseyenko AV; Roy M; Lee C
Nucleic Acids Res; 2007 Jan; 35(Database issue):D93-8. PubMed ID: 17108355
[TBL] [Abstract][Full Text] [Related]
11. PriFi: using a multiple alignment of related sequences to find primers for amplification of homologs.
Fredslund J; Schauser L; Madsen LH; Sandal N; Stougaard J
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W516-20. PubMed ID: 15980525
[TBL] [Abstract][Full Text] [Related]
12. Phytome: a platform for plant comparative genomics.
Hartmann S; Lu D; Phillips J; Vision TJ
Nucleic Acids Res; 2006 Jan; 34(Database issue):D724-30. PubMed ID: 16381967
[TBL] [Abstract][Full Text] [Related]
13. MafFilter: a highly flexible and extensible multiple genome alignment files processor.
Dutheil JY; Gaillard S; Stukenbrock EH
BMC Genomics; 2014 Jan; 15():53. PubMed ID: 24447531
[TBL] [Abstract][Full Text] [Related]
14. Different phylogenomic approaches to resolve the evolutionary relationships among model fish species.
Negrisolo E; Kuhl H; Forcato C; Vitulo N; Reinhardt R; Patarnello T; Bargelloni L
Mol Biol Evol; 2010 Dec; 27(12):2757-74. PubMed ID: 20591844
[TBL] [Abstract][Full Text] [Related]
15. Mulan: multiple-sequence local alignment and visualization for studying function and evolution.
Ovcharenko I; Loots GG; Giardine BM; Hou M; Ma J; Hardison RC; Stubbs L; Miller W
Genome Res; 2005 Jan; 15(1):184-94. PubMed ID: 15590941
[TBL] [Abstract][Full Text] [Related]
16. rVISTA 2.0: evolutionary analysis of transcription factor binding sites.
Loots GG; Ovcharenko I
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W217-21. PubMed ID: 15215384
[TBL] [Abstract][Full Text] [Related]
17. Genomic multiple sequence alignments: refinement using a genetic algorithm.
Wang C; Lefkowitz EJ
BMC Bioinformatics; 2005 Aug; 6():200. PubMed ID: 16086841
[TBL] [Abstract][Full Text] [Related]
18. MBGD: a platform for microbial comparative genomics based on the automated construction of orthologous groups.
Uchiyama I
Nucleic Acids Res; 2007 Jan; 35(Database issue):D343-6. PubMed ID: 17135196
[TBL] [Abstract][Full Text] [Related]
19. MultiPipMaker: comparative alignment server for multiple DNA sequences.
Elnitski L; Riemer C; Burhans R; Hardison R; Miller W
Curr Protoc Bioinformatics; 2005 Apr; Chapter 10():Unit10.4. PubMed ID: 18428743
[TBL] [Abstract][Full Text] [Related]
20. AMOD: a morpholino oligonucleotide selection tool.
Klee EW; Shim KJ; Pickart MA; Ekker SC; Ellis LB
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W506-11. PubMed ID: 15980523
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]