75 related articles for article (PubMed ID: 25719343)
21. Identification of coding and non-coding sequences using local Holder exponent formalism.
Kulkarni OC; Vigneshwar R; Jayaraman VK; Kulkarni BD
Bioinformatics; 2005 Oct; 21(20):3818-23. PubMed ID: 16118261
[TBL] [Abstract][Full Text] [Related]
22. Periodicity in prokaryotic and eukaryotic genomes identified by power spectrum analysis.
Fukushima A; Ikemura T; Kinouchi M; Oshima T; Kudo Y; Mori H; Kanaya S
Gene; 2002 Oct; 300(1-2):203-11. PubMed ID: 12468102
[TBL] [Abstract][Full Text] [Related]
23. Prediction of protein coding regions by the 3-base periodicity analysis of a DNA sequence.
Yin C; Yau SS
J Theor Biol; 2007 Aug; 247(4):687-94. PubMed ID: 17509616
[TBL] [Abstract][Full Text] [Related]
24. Revisiting the relationship between compositional sequence complexity and periodicity.
Bolshoy A
Comput Biol Chem; 2008 Feb; 32(1):17-28. PubMed ID: 17983838
[TBL] [Abstract][Full Text] [Related]
25. Genomes are covered with ubiquitous 11 bp periodic patterns, the "class A flexible patterns".
Larsabal E; Danchin A
BMC Bioinformatics; 2005 Aug; 6():206. PubMed ID: 16120222
[TBL] [Abstract][Full Text] [Related]
26. Power-laws in the genomic distribution of coding segments in several organisms: an evolutionary trace of segmental duplications, possible paleopolyploidy and gene loss.
Sellis D; Almirantis Y
Gene; 2009 Nov; 447(1):18-28. PubMed ID: 19591912
[TBL] [Abstract][Full Text] [Related]
27. Numericalization of the self adaptive spectral rotation method for coding region prediction.
Chen B; Ji P
J Theor Biol; 2012 Mar; 296():95-102. PubMed ID: 22178641
[TBL] [Abstract][Full Text] [Related]
28. Analysis of the multi-copied genes and the impact of the redundant protein coding sequences on gene annotation in prokaryotic genomes.
Yu JF; Chen QL; Ren J; Yang YL; Wang JH; Sun X
J Theor Biol; 2015 Jul; 376():8-14. PubMed ID: 25865522
[TBL] [Abstract][Full Text] [Related]
29. A simple model to explain three-base periodicity in coding DNA.
Sánchez J; López-Villaseñor I
FEBS Lett; 2006 Nov; 580(27):6413-22. PubMed ID: 17097640
[TBL] [Abstract][Full Text] [Related]
30. Hyperbolic rules of the cooperative organization of eukaryotic and prokaryotic genomes.
Petoukhov SV
Biosystems; 2020 Dec; 198():104273. PubMed ID: 33065213
[TBL] [Abstract][Full Text] [Related]
31. FusionDB: a database for in-depth analysis of prokaryotic gene fusion events.
Suhre K; Claverie JM
Nucleic Acids Res; 2004 Jan; 32(Database issue):D273-6. PubMed ID: 14681411
[TBL] [Abstract][Full Text] [Related]
32. Finding sequence motifs in prokaryotic genomes--a brief practical guide for a microbiologist.
Mrázek J
Brief Bioinform; 2009 Sep; 10(5):525-36. PubMed ID: 19553402
[TBL] [Abstract][Full Text] [Related]
33. Phylogenetic signals in DNA composition: limitations and prospects.
Mrázek J
Mol Biol Evol; 2009 May; 26(5):1163-9. PubMed ID: 19233962
[TBL] [Abstract][Full Text] [Related]
34. Constraint on di-nucleotides by codon usage bias in bacterial genomes.
Satapathy SS; Powdel BR; Dutta M; Buragohain AK; Ray SK
Gene; 2014 Feb; 536(1):18-28. PubMed ID: 24333347
[TBL] [Abstract][Full Text] [Related]
35. Identification and analysis of genes and pseudogenes within duplicated regions in the human and mouse genomes.
Suyama M; Harrington E; Bork P; Torrents D
PLoS Comput Biol; 2006 Jun; 2(6):e76. PubMed ID: 16846249
[TBL] [Abstract][Full Text] [Related]
36. HeteroGenome: database of genome periodicity.
Chaley M; Kutyrkin V; Tulbasheva G; Teplukhina E; Nazipova N
Database (Oxford); 2014; 2014():. PubMed ID: 24857969
[TBL] [Abstract][Full Text] [Related]
37. "Anticipated" nucleosome positioning pattern in prokaryotes.
Rapoport AE; Trifonov EN
Gene; 2011 Nov; 488(1-2):41-5. PubMed ID: 21884764
[TBL] [Abstract][Full Text] [Related]
38. [Investigation of the amino acid sequences of open reading frames of the Mycobacterium tuberculosis complete genome with the use of the protein family pattern bank Prof_Pat].
Nizolenko LF; Kozhina EM; Iarygin AA; Bachinskiĭ AG
Biofizika; 2005; 50(6):986-92. PubMed ID: 16358775
[TBL] [Abstract][Full Text] [Related]
39. Composition bias and the origin of ORFan genes.
Yomtovian I; Teerakulkittipong N; Lee B; Moult J; Unger R
Bioinformatics; 2010 Apr; 26(8):996-9. PubMed ID: 20231229
[TBL] [Abstract][Full Text] [Related]
40. On application of directons to functional classification of genes in prokaryotes.
Wu H; Mao F; Olman V; Xu Y
Comput Biol Chem; 2008 Jun; 32(3):176-84. PubMed ID: 18440870
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
