These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
276 related articles for article (PubMed ID: 25720775)
1. ChIP-exo signal associated with DNA-binding motifs provides insight into the genomic binding of the glucocorticoid receptor and cooperating transcription factors. Starick SR; Ibn-Salem J; Jurk M; Hernandez C; Love MI; Chung HR; Vingron M; Thomas-Chollier M; Meijsing SH Genome Res; 2015 Jun; 25(6):825-35. PubMed ID: 25720775 [TBL] [Abstract][Full Text] [Related]
2. Development of an Illumina-based ChIP-exonuclease method provides insight into FoxA1-DNA binding properties. Serandour AA; Brown GD; Cohen JD; Carroll JS Genome Biol; 2013 Dec; 14(12):R147. PubMed ID: 24373287 [TBL] [Abstract][Full Text] [Related]
3. MACE: model based analysis of ChIP-exo. Wang L; Chen J; Wang C; Uusküla-Reimand L; Chen K; Medina-Rivera A; Young EJ; Zimmermann MT; Yan H; Sun Z; Zhang Y; Wu ST; Huang H; Wilson MD; Kocher JP; Li W Nucleic Acids Res; 2014 Nov; 42(20):e156. PubMed ID: 25249628 [TBL] [Abstract][Full Text] [Related]
4. PeakXus: comprehensive transcription factor binding site discovery from ChIP-Nexus and ChIP-Exo experiments. Hartonen T; Sahu B; Dave K; Kivioja T; Taipale J Bioinformatics; 2016 Sep; 32(17):i629-i638. PubMed ID: 27587683 [TBL] [Abstract][Full Text] [Related]
5. Resolving diverse protein-DNA footprints from exonuclease-based ChIP experiments. Biswas A; Narlikar L Bioinformatics; 2021 Jul; 37(Suppl_1):i367-i375. PubMed ID: 34252930 [TBL] [Abstract][Full Text] [Related]
7. An Optimized High-Resolution Mapping Method for Glucocorticoid Receptor-DNA Binding in Mouse Primary Macrophages. Ansari SA; Uhlenhaut NH Methods Mol Biol; 2024; 2846():91-107. PubMed ID: 39141231 [TBL] [Abstract][Full Text] [Related]
8. An integrated pipeline for the genome-wide analysis of transcription factor binding sites from ChIP-Seq. Mercier E; Droit A; Li L; Robertson G; Zhang X; Gottardo R PLoS One; 2011 Feb; 6(2):e16432. PubMed ID: 21358819 [TBL] [Abstract][Full Text] [Related]
9. A genome-wide signature of glucocorticoid receptor binding in neuronal PC12 cells. Polman JA; Welten JE; Bosch DS; de Jonge RT; Balog J; van der Maarel SM; de Kloet ER; Datson NA BMC Neurosci; 2012 Oct; 13():118. PubMed ID: 23031785 [TBL] [Abstract][Full Text] [Related]
10. Pinpointing transcription factor binding sites from ChIP-seq data with SeqSite. Wang X; Zhang X BMC Syst Biol; 2011; 5 Suppl 2(Suppl 2):S3. PubMed ID: 22784574 [TBL] [Abstract][Full Text] [Related]
11. Role of the chromatin landscape and sequence in determining cell type-specific genomic glucocorticoid receptor binding and gene regulation. Love MI; Huska MR; Jurk M; Schöpflin R; Starick SR; Schwahn K; Cooper SB; Yamamoto KR; Thomas-Chollier M; Vingron M; Meijsing SH Nucleic Acids Res; 2017 Feb; 45(4):1805-1819. PubMed ID: 27903902 [TBL] [Abstract][Full Text] [Related]
12. Genetic variations of DNA bindings of FOXA1 and co-factors in breast cancer susceptibility. Wen W; Chen Z; Bao J; Long Q; Shu XO; Zheng W; Guo X Nat Commun; 2021 Sep; 12(1):5318. PubMed ID: 34518541 [TBL] [Abstract][Full Text] [Related]
13. T-KDE: a method for genome-wide identification of constitutive protein binding sites from multiple ChIP-seq data sets. Li Y; Umbach DM; Li L BMC Genomics; 2014 Jan; 15():27. PubMed ID: 24428924 [TBL] [Abstract][Full Text] [Related]
14. A map of direct TF-DNA interactions in the human genome. Gheorghe M; Sandve GK; Khan A; Chèneby J; Ballester B; Mathelier A Nucleic Acids Res; 2019 Feb; 47(4):e21. PubMed ID: 30517703 [TBL] [Abstract][Full Text] [Related]
15. Characterizing protein-DNA binding event subtypes in ChIP-exo data. Yamada N; Lai WKM; Farrell N; Pugh BF; Mahony S Bioinformatics; 2019 Mar; 35(6):903-913. PubMed ID: 30165373 [TBL] [Abstract][Full Text] [Related]
16. Role of ChIP-seq in the discovery of transcription factor binding sites, differential gene regulation mechanism, epigenetic marks and beyond. Mundade R; Ozer HG; Wei H; Prabhu L; Lu T Cell Cycle; 2014; 13(18):2847-52. PubMed ID: 25486472 [TBL] [Abstract][Full Text] [Related]
17. Precise Identification of DNA-Binding Proteins Genomic Location by Exonuclease Coupled Chromatin Immunoprecipitation (ChIP-exo). Matteau D; Rodrigue S Methods Mol Biol; 2015; 1334():173-93. PubMed ID: 26404150 [TBL] [Abstract][Full Text] [Related]
18. Genome-wide analysis reveals positional-nucleosome-oriented binding pattern of pioneer factor FOXA1. Ye Z; Chen Z; Sunkel B; Frietze S; Huang TH; Wang Q; Jin VX Nucleic Acids Res; 2016 Sep; 44(16):7540-54. PubMed ID: 27458208 [TBL] [Abstract][Full Text] [Related]
19. Improved linking of motifs to their TFs using domain information. Baumgarten N; Schmidt F; Schulz MH Bioinformatics; 2020 Mar; 36(6):1655-1662. PubMed ID: 31742324 [TBL] [Abstract][Full Text] [Related]
20. 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs. Ibn-Salem J; Andrade-Navarro MA BMC Genomics; 2019 Oct; 20(1):777. PubMed ID: 31653198 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]