These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
22. An intricate network of conserved DNA upstream motifs and associated transcription factors regulate the expression of uromodulin gene. Srivastava R; Micanovic R; El-Achkar TM; Janga SC J Urol; 2014 Sep; 192(3):981-9. PubMed ID: 24594405 [TBL] [Abstract][Full Text] [Related]
23. A DNA Motif Lexicon: cataloguing and annotating sequences. Dyer BD; LeBlanc MD; Benz S; Cahalan P; Donorfio B; Sagui P; Villa A; Williams G In Silico Biol; 2004; 4(4):471-8. PubMed ID: 15506996 [TBL] [Abstract][Full Text] [Related]
24. Transterm--extended search facilities and improved integration with other databases. Jacobs GH; Stockwell PA; Tate WP; Brown CM Nucleic Acids Res; 2006 Jan; 34(Database issue):D37-40. PubMed ID: 16381889 [TBL] [Abstract][Full Text] [Related]
26. Computer-assisted identification of cell cycle-related genes: new targets for E2F transcription factors. Kel AE; Kel-Margoulis OV; Farnham PJ; Bartley SM; Wingender E; Zhang MQ J Mol Biol; 2001 May; 309(1):99-120. PubMed ID: 11491305 [TBL] [Abstract][Full Text] [Related]
27. An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments. Liu XS; Brutlag DL; Liu JS Nat Biotechnol; 2002 Aug; 20(8):835-9. PubMed ID: 12101404 [TBL] [Abstract][Full Text] [Related]
28. CardioSignal: a database of transcriptional regulation in cardiac development and hypertrophy. Zhen Y; Wang Y; Zhang W; Zhou C; Hui R Int J Cardiol; 2007 Apr; 116(3):338-47. PubMed ID: 16887212 [TBL] [Abstract][Full Text] [Related]
29. ELM--the database of eukaryotic linear motifs. Dinkel H; Michael S; Weatheritt RJ; Davey NE; Van Roey K; Altenberg B; Toedt G; Uyar B; Seiler M; Budd A; Jödicke L; Dammert MA; Schroeter C; Hammer M; Schmidt T; Jehl P; McGuigan C; Dymecka M; Chica C; Luck K; Via A; Chatr-Aryamontri A; Haslam N; Grebnev G; Edwards RJ; Steinmetz MO; Meiselbach H; Diella F; Gibson TJ Nucleic Acids Res; 2012 Jan; 40(Database issue):D242-51. PubMed ID: 22110040 [TBL] [Abstract][Full Text] [Related]
30. Positional bias of general and tissue-specific regulatory motifs in mouse gene promoters. Bellora N; Farré D; Albà MM BMC Genomics; 2007 Dec; 8():459. PubMed ID: 18078513 [TBL] [Abstract][Full Text] [Related]
31. HRTBLDb: an informative data resource for hormone receptors target binding loci. Kennedy BA; Gao W; Huang TH; Jin VX Nucleic Acids Res; 2010 Jan; 38(Database issue):D676-81. PubMed ID: 19773424 [TBL] [Abstract][Full Text] [Related]
33. MotifMap: a human genome-wide map of candidate regulatory motif sites. Xie X; Rigor P; Baldi P Bioinformatics; 2009 Jan; 25(2):167-74. PubMed ID: 19017655 [TBL] [Abstract][Full Text] [Related]
34. TFSyntax: a database of transcription factors binding syntax in mammalian genomes. Zhao Y Nucleic Acids Res; 2023 Jan; 51(D1):D306-D314. PubMed ID: 36200824 [TBL] [Abstract][Full Text] [Related]
35. Identification of DNA motif pairs on paired sequences based on composite heterogeneous graph. Wu Q; Li Y; Wang Q; Zhao X; Sun D; Liu B Front Genet; 2024; 15():1424085. PubMed ID: 38952710 [TBL] [Abstract][Full Text] [Related]
36. Non-B DB v2.0: a database of predicted non-B DNA-forming motifs and its associated tools. Cer RZ; Donohue DE; Mudunuri US; Temiz NA; Loss MA; Starner NJ; Halusa GN; Volfovsky N; Yi M; Luke BT; Bacolla A; Collins JR; Stephens RM Nucleic Acids Res; 2013 Jan; 41(Database issue):D94-D100. PubMed ID: 23125372 [TBL] [Abstract][Full Text] [Related]
37. Cofunctional Subpathways Were Regulated by Transcription Factor with Common Motif, Common Family, or Common Tissue. Su F; Shang D; Xu Y; Feng L; Yang H; Liu B; Su S; Chen L; Li X Biomed Res Int; 2015; 2015():780357. PubMed ID: 26688819 [TBL] [Abstract][Full Text] [Related]
38. RegAnalyst: a web interface for the analysis of regulatory motifs, networks and pathways. Sharma D; Mohanty D; Surolia A Nucleic Acids Res; 2009 Jul; 37(Web Server issue):W193-201. PubMed ID: 19465400 [TBL] [Abstract][Full Text] [Related]
39. RhizoBindingSites, a Database of DNA-Binding Motifs in Nitrogen-Fixing Bacteria Inferred Using a Footprint Discovery Approach. Taboada-Castro H; Castro-Mondragón JA; Aguilar-Vera A; Hernández-Álvarez AJ; van Helden J; Encarnación-Guevara S Front Microbiol; 2020; 11():567471. PubMed ID: 33250866 [TBL] [Abstract][Full Text] [Related]
40. D-MATRIX: a web tool for constructing weight matrix of conserved DNA motifs. Sen N; Mishra M; Khan F; Meena A; Sharma A Bioinformation; 2009 Jul; 3(10):415-8. PubMed ID: 19759861 [TBL] [Abstract][Full Text] [Related] [Previous] [Next] [New Search]