These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

119 related articles for article (PubMed ID: 25725219)

  • 1. Current status and future challenges in T-cell receptor/peptide/MHC molecular dynamics simulations.
    Knapp B; Demharter S; Esmaielbeiki R; Deane CM
    Brief Bioinform; 2015 Nov; 16(6):1035-44. PubMed ID: 25725219
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MPID-T: database for sequence-structure-function information on T-cell receptor/peptide/MHC interactions.
    Tong JC; Kong L; Tan TW; Ranganathan S
    Appl Bioinformatics; 2006; 5(2):111-4. PubMed ID: 16722775
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Identification of the cognate peptide-MHC target of T cell receptors using molecular modeling and force field scoring.
    Lanzarotti E; Marcatili P; Nielsen M
    Mol Immunol; 2018 Feb; 94():91-97. PubMed ID: 29288899
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Insights into the structure of the LC13 TCR/HLA-B8-EBV peptide complex with molecular dynamics simulations.
    Stavrakoudis A
    Cell Biochem Biophys; 2011 Jul; 60(3):283-95. PubMed ID: 21253892
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Large scale characterization of the LC13 TCR and HLA-B8 structural landscape in reaction to 172 altered peptide ligands: a molecular dynamics simulation study.
    Knapp B; Dunbar J; Deane CM
    PLoS Comput Biol; 2014 Aug; 10(8):e1003748. PubMed ID: 25101830
    [TBL] [Abstract][Full Text] [Related]  

  • 6. T-Cell Receptor Binding Affects the Dynamics of the Peptide/MHC-I Complex.
    Knapp B; Deane CM
    J Chem Inf Model; 2016 Jan; 56(1):46-53. PubMed ID: 26633740
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The effect of mutations on the alloreactive T cell receptor/peptide-MHC interface structure: a molecular dynamics study.
    Wolfson MY; Nam K; Chakraborty AK
    J Phys Chem B; 2011 Jun; 115(25):8317-27. PubMed ID: 21651302
    [TBL] [Abstract][Full Text] [Related]  

  • 8. How peptide/MHC presence affects the dynamics of the LC13 T-cell receptor.
    Dominguez JL; Knapp B
    Sci Rep; 2019 Feb; 9(1):2638. PubMed ID: 30804417
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Dynamical footprint of cross-reactivity in a human autoimmune T-cell receptor.
    Kumar A; Delogu F
    Sci Rep; 2017 Feb; 7():42496. PubMed ID: 28195200
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Toward the atomistic simulation of T cell epitopes automated construction of MHC: peptide structures for free energy calculations.
    Todman SJ; Halling-Brown MD; Davies MN; Flower DR; Kayikci M; Moss DS
    J Mol Graph Model; 2008 Feb; 26(6):957-61. PubMed ID: 17766153
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Molecular modeling of a T-cell receptor bound to a major histocompatibility complex molecule: implications for T-cell recognition.
    Almagro JC; Vargas-Madrazo E; Lara-Ochoa F; Horjales E
    Protein Sci; 1995 Sep; 4(9):1708-17. PubMed ID: 8528069
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Unraveling the Allosteric Communication Mechanisms in T-Cell Receptor-Peptide-Loaded Major Histocompatibility Complex Dynamics Using Molecular Dynamics Simulations: An Approach Based on Dynamic Cross Correlation Maps and Residue Interaction Energy Calculations.
    Bingöl EN; Serçinoğlu O; Ozbek P
    J Chem Inf Model; 2021 May; 61(5):2444-2453. PubMed ID: 33930270
    [TBL] [Abstract][Full Text] [Related]  

  • 13. How T cell receptors interact with peptide-MHCs: a multiple steered molecular dynamics study.
    Cuendet MA; Zoete V; Michielin O
    Proteins; 2011 Nov; 79(11):3007-24. PubMed ID: 21989928
    [TBL] [Abstract][Full Text] [Related]  

  • 14. T cell antigen receptor recognition of antigen-presenting molecules.
    Rossjohn J; Gras S; Miles JJ; Turner SJ; Godfrey DI; McCluskey J
    Annu Rev Immunol; 2015; 33():169-200. PubMed ID: 25493333
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Two-step binding mechanism for T-cell receptor recognition of peptide MHC.
    Wu LC; Tuot DS; Lyons DS; Garcia KC; Davis MM
    Nature; 2002 Aug; 418(6897):552-6. PubMed ID: 12152083
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Intramolecular Domain Movements of Free and Bound pMHC and TCR Proteins: A Molecular Dynamics Simulation Study.
    Karch R; Stocsits C; Ilieva N; Schreiner W
    Cells; 2019 Jul; 8(7):. PubMed ID: 31337065
    [TBL] [Abstract][Full Text] [Related]  

  • 17. MHC binding affects the dynamics of different T-cell receptors in different ways.
    Knapp B; van der Merwe PA; Dushek O; Deane CM
    PLoS Comput Biol; 2019 Sep; 15(9):e1007338. PubMed ID: 31498801
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Toward an atomistic understanding of the immune synapse: large-scale molecular dynamics simulation of a membrane-embedded TCR-pMHC-CD4 complex.
    Wan S; Flower DR; Coveney PV
    Mol Immunol; 2008 Mar; 45(5):1221-30. PubMed ID: 17980430
    [TBL] [Abstract][Full Text] [Related]  

  • 19. T-cell receptor triggering is critically dependent on the dimensions of its peptide-MHC ligand.
    Choudhuri K; Wiseman D; Brown MH; Gould K; van der Merwe PA
    Nature; 2005 Jul; 436(7050):578-82. PubMed ID: 16049493
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Molecular Dynamics Simulations Reveal Canonical Conformations in Different pMHC/TCR Interactions.
    Alba J; Rienzo LD; Milanetti E; Acuto O; D'Abramo M
    Cells; 2020 Apr; 9(4):. PubMed ID: 32290289
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.