These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

91 related articles for article (PubMed ID: 25725494)

  • 1. GeLL: a generalized likelihood library for phylogenetic models.
    Money D; Whelan S
    Bioinformatics; 2015 Jul; 31(14):2391-3. PubMed ID: 25725494
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Non-homogeneous models of sequence evolution in the Bio++ suite of libraries and programs.
    Dutheil J; Boussau B
    BMC Evol Biol; 2008 Sep; 8():255. PubMed ID: 18808672
    [TBL] [Abstract][Full Text] [Related]  

  • 3. The phylogenetic likelihood library.
    Flouri T; Izquierdo-Carrasco F; Darriba D; Aberer AJ; Nguyen LT; Minh BQ; Von Haeseler A; Stamatakis A
    Syst Biol; 2015 Mar; 64(2):356-62. PubMed ID: 25358969
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Modelling heterotachy in phylogenetic inference by reversible-jump Markov chain Monte Carlo.
    Pagel M; Meade A
    Philos Trans R Soc Lond B Biol Sci; 2008 Dec; 363(1512):3955-64. PubMed ID: 18852097
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Bayesian coestimation of phylogeny and sequence alignment.
    Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
    BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation.
    Yang Z; Goldman N; Friday A
    Mol Biol Evol; 1994 Mar; 11(2):316-24. PubMed ID: 8170371
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Likelihood analysis of phylogenetic networks using directed graphical models.
    Strimmer K; Moulton V
    Mol Biol Evol; 2000 Jun; 17(6):875-81. PubMed ID: 10833193
    [TBL] [Abstract][Full Text] [Related]  

  • 8. DPRml: distributed phylogeny reconstruction by maximum likelihood.
    Keane TM; Naughton TJ; Travers SA; McInerney JO; McCormack GP
    Bioinformatics; 2005 Apr; 21(7):969-74. PubMed ID: 15513992
    [TBL] [Abstract][Full Text] [Related]  

  • 9. PyEvolve: a toolkit for statistical modelling of molecular evolution.
    Butterfield A; Vedagiri V; Lang E; Lawrence C; Wakefield MJ; Isaev A; Huttley GA
    BMC Bioinformatics; 2004 Jan; 5():1. PubMed ID: 14706121
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PAL: an object-oriented programming library for molecular evolution and phylogenetics.
    Drummond A; Strimmer K
    Bioinformatics; 2001 Jul; 17(7):662-3. PubMed ID: 11448888
    [TBL] [Abstract][Full Text] [Related]  

  • 11. jModelTest: phylogenetic model averaging.
    Posada D
    Mol Biol Evol; 2008 Jul; 25(7):1253-6. PubMed ID: 18397919
    [TBL] [Abstract][Full Text] [Related]  

  • 12. bModelTest: Bayesian phylogenetic site model averaging and model comparison.
    Bouckaert RR; Drummond AJ
    BMC Evol Biol; 2017 Feb; 17(1):42. PubMed ID: 28166715
    [TBL] [Abstract][Full Text] [Related]  

  • 13. On the inference of large phylogenies with long branches: how long is too long?
    Mossel E; Roch S; Sly A
    Bull Math Biol; 2011 Jul; 73(7):1627-44. PubMed ID: 20931293
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Kakusan4 and Aminosan: two programs for comparing nonpartitioned, proportional and separate models for combined molecular phylogenetic analyses of multilocus sequence data.
    Tanabe AS
    Mol Ecol Resour; 2011 Sep; 11(5):914-21. PubMed ID: 21592310
    [TBL] [Abstract][Full Text] [Related]  

  • 15. PuMA: Bayesian analysis of partitioned (and unpartitioned) model adequacy.
    Brown JM; ElDabaje R
    Bioinformatics; 2009 Feb; 25(4):537-8. PubMed ID: 19098028
    [TBL] [Abstract][Full Text] [Related]  

  • 16. MEGA-CC: computing core of molecular evolutionary genetics analysis program for automated and iterative data analysis.
    Kumar S; Stecher G; Peterson D; Tamura K
    Bioinformatics; 2012 Oct; 28(20):2685-6. PubMed ID: 22923298
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Evaluation of Ancestral Sequence Reconstruction Methods to Infer Nonstationary Patterns of Nucleotide Substitution.
    Matsumoto T; Akashi H; Yang Z
    Genetics; 2015 Jul; 200(3):873-90. PubMed ID: 25948563
    [TBL] [Abstract][Full Text] [Related]  

  • 18. pez: phylogenetics for the environmental sciences.
    Pearse WD; Cadotte MW; Cavender-Bares J; Ives AR; Tucker CM; Walker SC; Helmus MR
    Bioinformatics; 2015 Sep; 31(17):2888-90. PubMed ID: 25948716
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Reconstruction of ancestral nucleotide sequences and estimation of substitution frequencies in a star phylogeny.
    Arndt PF
    Gene; 2007 Apr; 390(1-2):75-83. PubMed ID: 17223282
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Empirical models for substitution in ribosomal RNA.
    Smith AD; Lui TW; Tillier ER
    Mol Biol Evol; 2004 Mar; 21(3):419-27. PubMed ID: 14660689
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.