These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

229 related articles for article (PubMed ID: 25744941)

  • 1. From static to dynamic: the need for structural ensembles and a predictive model of RNA folding and function.
    Herschlag D; Allred BE; Gowrishankar S
    Curr Opin Struct Biol; 2015 Feb; 30():125-133. PubMed ID: 25744941
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Quantitative tests of a reconstitution model for RNA folding thermodynamics and kinetics.
    Bisaria N; Greenfeld M; Limouse C; Mabuchi H; Herschlag D
    Proc Natl Acad Sci U S A; 2017 Sep; 114(37):E7688-E7696. PubMed ID: 28839094
    [TBL] [Abstract][Full Text] [Related]  

  • 3. High-Throughput Investigation of Diverse Junction Elements in RNA Tertiary Folding.
    Denny SK; Bisaria N; Yesselman JD; Das R; Herschlag D; Greenleaf WJ
    Cell; 2018 Jul; 174(2):377-390.e20. PubMed ID: 29961580
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Characterizing the Conformational Free-Energy Landscape of RNA Stem-Loops Using Single-Molecule Field-Effect Transistors.
    Jang SS; Dubnik S; Hon J; Hellenkamp B; Lynall DG; Shepard KL; Nuckolls C; Gonzalez RL
    J Am Chem Soc; 2023 Jan; 145(1):402-412. PubMed ID: 36547391
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Single-Molecule Fluorescence Reveals Commonalities and Distinctions among Natural and in Vitro-Selected RNA Tertiary Motifs in a Multistep Folding Pathway.
    Bonilla S; Limouse C; Bisaria N; Gebala M; Mabuchi H; Herschlag D
    J Am Chem Soc; 2017 Dec; 139(51):18576-18589. PubMed ID: 29185740
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Kinetic and thermodynamic framework for P4-P6 RNA reveals tertiary motif modularity and modulation of the folding preferred pathway.
    Bisaria N; Greenfeld M; Limouse C; Pavlichin DS; Mabuchi H; Herschlag D
    Proc Natl Acad Sci U S A; 2016 Aug; 113(34):E4956-65. PubMed ID: 27493222
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Do conformational biases of simple helical junctions influence RNA folding stability and specificity?
    Chu VB; Lipfert J; Bai Y; Pande VS; Doniach S; Herschlag D
    RNA; 2009 Dec; 15(12):2195-205. PubMed ID: 19850914
    [TBL] [Abstract][Full Text] [Related]  

  • 8. 'Z-DNA like' fragments in RNA: a recurring structural motif with implications for folding, RNA/protein recognition and immune response.
    D'Ascenzo L; Leonarski F; Vicens Q; Auffinger P
    Nucleic Acids Res; 2016 Jul; 44(12):5944-56. PubMed ID: 27151194
    [TBL] [Abstract][Full Text] [Related]  

  • 9. 2-Aminopurine Fluorescence as a Probe of Local RNA Structure and Dynamics and Global Folding.
    Rau MJ; Hall KB
    Methods Enzymol; 2015; 558():99-124. PubMed ID: 26068739
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Challenges and approaches to predicting RNA with multiple functional structures.
    Schroeder SJ
    RNA; 2018 Dec; 24(12):1615-1624. PubMed ID: 30143552
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Landscape Zooming toward the Prediction of RNA Cotranscriptional Folding.
    Xu X; Jin L; Xie L; Chen SJ
    J Chem Theory Comput; 2022 Mar; 18(3):2002-2015. PubMed ID: 35133833
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Free energy landscape and multiple folding pathways of an H-type RNA pseudoknot.
    Bian Y; Zhang J; Wang J; Wang J; Wang W
    PLoS One; 2015; 10(6):e0129089. PubMed ID: 26030098
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The molecular interactions that stabilize RNA tertiary structure: RNA motifs, patterns, and networks.
    Butcher SE; Pyle AM
    Acc Chem Res; 2011 Dec; 44(12):1302-11. PubMed ID: 21899297
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Computational Design of a Circular RNA with Prionlike Behavior.
    Badelt S; Flamm C; Hofacker IL
    Artif Life; 2016; 22(2):172-84. PubMed ID: 26934089
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Unveiling Inherent Degeneracies in Determining Population-Weighted Ensembles of Interdomain Orientational Distributions Using NMR Residual Dipolar Couplings: Application to RNA Helix Junction Helix Motifs.
    Yang S; Al-Hashimi HM
    J Phys Chem B; 2015 Jul; 119(30):9614-26. PubMed ID: 26131693
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Comparative Visualization of the RNA Suboptimal Conformational Ensemble In Vivo.
    Woods CT; Lackey L; Williams B; Dokholyan NV; Gotz D; Laederach A
    Biophys J; 2017 Jul; 113(2):290-301. PubMed ID: 28625696
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Local kinetic measures of macromolecular structure reveal partitioning among multiple parallel pathways from the earliest steps in the folding of a large RNA molecule.
    Laederach A; Shcherbakova I; Liang MP; Brenowitz M; Altman RB
    J Mol Biol; 2006 May; 358(4):1179-90. PubMed ID: 16574145
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Thermodynamic and kinetic folding of riboswitches.
    Badelt S; Hammer S; Flamm C; Hofacker IL
    Methods Enzymol; 2015; 553():193-213. PubMed ID: 25726466
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Probing the kinetic and thermodynamic consequences of the tetraloop/tetraloop receptor monovalent ion-binding site in P4-P6 RNA by smFRET.
    Bisaria N; Herschlag D
    Biochem Soc Trans; 2015 Apr; 43(2):172-8. PubMed ID: 25849913
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Energy barriers, pathways, and dynamics during folding of large, multidomain RNAs.
    Shcherbakova I; Mitra S; Laederach A; Brenowitz M
    Curr Opin Chem Biol; 2008 Dec; 12(6):655-66. PubMed ID: 18926923
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.