345 related articles for article (PubMed ID: 25747664)
1. The role of DNA methylation in directing the functional organization of the cancer epigenome.
Lay FD; Liu Y; Kelly TK; Witt H; Farnham PJ; Jones PA; Berman BP
Genome Res; 2015 Apr; 25(4):467-77. PubMed ID: 25747664
[TBL] [Abstract][Full Text] [Related]
2. Defining Regulatory Elements in the Human Genome Using Nucleosome Occupancy and Methylome Sequencing (NOMe-Seq).
Rhie SK; Schreiner S; Farnham PJ
Methods Mol Biol; 2018; 1766():209-229. PubMed ID: 29605855
[TBL] [Abstract][Full Text] [Related]
3. DNA methylation directly silences genes with non-CpG island promoters and establishes a nucleosome occupied promoter.
Han H; Cortez CC; Yang X; Nichols PW; Jones PA; Liang G
Hum Mol Genet; 2011 Nov; 20(22):4299-310. PubMed ID: 21835883
[TBL] [Abstract][Full Text] [Related]
4. Contrasting chromatin organization of CpG islands and exons in the human genome.
Choi JK
Genome Biol; 2010; 11(7):R70. PubMed ID: 20602769
[TBL] [Abstract][Full Text] [Related]
5. Orphan CpG islands define a novel class of highly active enhancers.
Bell JSK; Vertino PM
Epigenetics; 2017 Jun; 12(6):449-464. PubMed ID: 28448736
[TBL] [Abstract][Full Text] [Related]
6. DNA methylation determines nucleosome occupancy in the 5'-CpG islands of tumor suppressor genes.
Portela A; Liz J; Nogales V; Setién F; Villanueva A; Esteller M
Oncogene; 2013 Nov; 32(47):5421-8. PubMed ID: 23686312
[TBL] [Abstract][Full Text] [Related]
7. Genomic profiling of DNA methyltransferases reveals a role for DNMT3B in genic methylation.
Baubec T; Colombo DF; Wirbelauer C; Schmidt J; Burger L; Krebs AR; Akalin A; Schübeler D
Nature; 2015 Apr; 520(7546):243-7. PubMed ID: 25607372
[TBL] [Abstract][Full Text] [Related]
8. Links between DNA methylation and nucleosome occupancy in the human genome.
Collings CK; Anderson JN
Epigenetics Chromatin; 2017; 10():18. PubMed ID: 28413449
[TBL] [Abstract][Full Text] [Related]
9. Bivalent Regions of Cytosine Methylation and H3K27 Acetylation Suggest an Active Role for DNA Methylation at Enhancers.
Charlet J; Duymich CE; Lay FD; Mundbjerg K; Dalsgaard Sørensen K; Liang G; Jones PA
Mol Cell; 2016 May; 62(3):422-431. PubMed ID: 27153539
[TBL] [Abstract][Full Text] [Related]
10. Identification of radiation-induced aberrant hypomethylation in colon cancer.
Bae JH; Kim JG; Heo K; Yang K; Kim TO; Yi JM
BMC Genomics; 2015 Feb; 16(1):56. PubMed ID: 25887185
[TBL] [Abstract][Full Text] [Related]
11. CAME: identification of chromatin accessibility from nucleosome occupancy and methylome sequencing.
Piao Y; Lee SK; Lee EJ; Robertson KD; Shi H; Ryu KH; Choi JH
Bioinformatics; 2017 Apr; 33(8):1139-1146. PubMed ID: 28035030
[TBL] [Abstract][Full Text] [Related]
12. hTERT is expressed in cancer cell lines despite promoter DNA methylation by preservation of unmethylated DNA and active chromatin around the transcription start site.
Zinn RL; Pruitt K; Eguchi S; Baylin SB; Herman JG
Cancer Res; 2007 Jan; 67(1):194-201. PubMed ID: 17210699
[TBL] [Abstract][Full Text] [Related]
13. Distinct genomic and epigenomic features demarcate hypomethylated blocks in colon cancer.
Sharmin M; Bravo HC; Hannenhalli S
BMC Cancer; 2016 Feb; 16():88. PubMed ID: 26868017
[TBL] [Abstract][Full Text] [Related]
14. Reconfiguration of nucleosome-depleted regions at distal regulatory elements accompanies DNA methylation of enhancers and insulators in cancer.
Taberlay PC; Statham AL; Kelly TK; Clark SJ; Jones PA
Genome Res; 2014 Sep; 24(9):1421-32. PubMed ID: 24916973
[TBL] [Abstract][Full Text] [Related]
15. Aberrant de novo methylation of the p16INK4A CpG island is initiated post gene silencing in association with chromatin remodelling and mimics nucleosome positioning.
Hinshelwood RA; Melki JR; Huschtscha LI; Paul C; Song JZ; Stirzaker C; Reddel RR; Clark SJ
Hum Mol Genet; 2009 Aug; 18(16):3098-109. PubMed ID: 19477956
[TBL] [Abstract][Full Text] [Related]
16. Intragenic CpG islands play important roles in bivalent chromatin assembly of developmental genes.
Lee SM; Lee J; Noh KM; Choi WY; Jeon S; Oh GT; Kim-Ha J; Jin Y; Cho SW; Kim YJ
Proc Natl Acad Sci U S A; 2017 Mar; 114(10):E1885-E1894. PubMed ID: 28223506
[TBL] [Abstract][Full Text] [Related]
17. Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing.
Lee I; Razaghi R; Gilpatrick T; Molnar M; Gershman A; Sadowski N; Sedlazeck FJ; Hansen KD; Simpson JT; Timp W
Nat Methods; 2020 Dec; 17(12):1191-1199. PubMed ID: 33230324
[TBL] [Abstract][Full Text] [Related]
18. Gene methylation in gastric cancer.
Qu Y; Dang S; Hou P
Clin Chim Acta; 2013 Sep; 424():53-65. PubMed ID: 23669186
[TBL] [Abstract][Full Text] [Related]
19. Genetic unmasking of epigenetically silenced tumor suppressor genes in colon cancer cells deficient in DNA methyltransferases.
Paz MF; Wei S; Cigudosa JC; Rodriguez-Perales S; Peinado MA; Huang TH; Esteller M
Hum Mol Genet; 2003 Sep; 12(17):2209-19. PubMed ID: 12915469
[TBL] [Abstract][Full Text] [Related]
20. Selective association of the methyl-CpG binding protein MBD2 with the silent p14/p16 locus in human neoplasia.
Magdinier F; Wolffe AP
Proc Natl Acad Sci U S A; 2001 Apr; 98(9):4990-5. PubMed ID: 11309512
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]