2951 related articles for article (PubMed ID: 25764973)
1. GASS: genome structural annotation for Eukaryotes based on species similarity.
Wang Y; Chen L; Song N; Lei X
BMC Genomics; 2015 Mar; 16(1):150. PubMed ID: 25764973
[TBL] [Abstract][Full Text] [Related]
2. A comprehensive evaluation of ensembl, RefSeq, and UCSC annotations in the context of RNA-seq read mapping and gene quantification.
Zhao S; Zhang B
BMC Genomics; 2015 Feb; 16(1):97. PubMed ID: 25765860
[TBL] [Abstract][Full Text] [Related]
3. CodingQuarry: highly accurate hidden Markov model gene prediction in fungal genomes using RNA-seq transcripts.
Testa AC; Hane JK; Ellwood SR; Oliver RP
BMC Genomics; 2015 Mar; 16(1):170. PubMed ID: 25887563
[TBL] [Abstract][Full Text] [Related]
4. Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive.
Nellore A; Jaffe AE; Fortin JP; Alquicira-Hernández J; Collado-Torres L; Wang S; Phillips RA; Karbhari N; Hansen KD; Langmead B; Leek JT
Genome Biol; 2016 Dec; 17(1):266. PubMed ID: 28038678
[TBL] [Abstract][Full Text] [Related]
5. AceView: a comprehensive cDNA-supported gene and transcripts annotation.
Thierry-Mieg D; Thierry-Mieg J
Genome Biol; 2006; 7 Suppl 1(Suppl 1):S12.1-14. PubMed ID: 16925834
[TBL] [Abstract][Full Text] [Related]
6. Comparison of RefSeq protein-coding regions in human and vertebrate genomes.
Fong JH; Murphy TD; Pruitt KD
BMC Genomics; 2013 Sep; 14():654. PubMed ID: 24063302
[TBL] [Abstract][Full Text] [Related]
7. Comparison of GENCODE and RefSeq gene annotation and the impact of reference geneset on variant effect prediction.
Frankish A; Uszczynska B; Ritchie GR; Gonzalez JM; Pervouchine D; Petryszak R; Mudge JM; Fonseca N; Brazma A; Guigo R; Harrow J
BMC Genomics; 2015; 16 Suppl 8(Suppl 8):S2. PubMed ID: 26110515
[TBL] [Abstract][Full Text] [Related]
8. Predicting Genes in Single Genomes with AUGUSTUS.
Hoff KJ; Stanke M
Curr Protoc Bioinformatics; 2019 Mar; 65(1):e57. PubMed ID: 30466165
[TBL] [Abstract][Full Text] [Related]
9. [Analysis, identification and correction of some errors of model refseqs appeared in NCBI Human Gene Database by in silico cloning and experimental verification of novel human genes].
Zhang DL; Ji L; Li YD
Yi Chuan Xue Bao; 2004 May; 31(5):431-43. PubMed ID: 15478601
[TBL] [Abstract][Full Text] [Related]
10. Assessing the impact of human genome annotation choice on RNA-seq expression estimates.
Wu PY; Phan JH; Wang MD
BMC Bioinformatics; 2013; 14 Suppl 11(Suppl 11):S8. PubMed ID: 24564364
[TBL] [Abstract][Full Text] [Related]
11. BEACON: automated tool for Bacterial GEnome Annotation ComparisON.
Kalkatawi M; Alam I; Bajic VB
BMC Genomics; 2015 Aug; 16(1):616. PubMed ID: 26283419
[TBL] [Abstract][Full Text] [Related]
12. Integrating alternative splicing detection into gene prediction.
Foissac S; Schiex T
BMC Bioinformatics; 2005 Feb; 6():25. PubMed ID: 15705189
[TBL] [Abstract][Full Text] [Related]
13. Structural and Functional Annotation of Eukaryotic Genomes with GenSAS.
Humann JL; Lee T; Ficklin S; Main D
Methods Mol Biol; 2019; 1962():29-51. PubMed ID: 31020553
[TBL] [Abstract][Full Text] [Related]
14. Knowledge-based reconstruction of mRNA transcripts with short sequencing reads for transcriptome research.
Seok J; Xu W; Jiang H; Davis RW; Xiao W
PLoS One; 2012; 7(2):e31440. PubMed ID: 22312447
[TBL] [Abstract][Full Text] [Related]
15. Genome annotation of Anopheles gambiae using mass spectrometry-derived data.
Kalume DE; Peri S; Reddy R; Zhong J; Okulate M; Kumar N; Pandey A
BMC Genomics; 2005 Sep; 6():128. PubMed ID: 16171517
[TBL] [Abstract][Full Text] [Related]
16. yrGATE: a web-based gene-structure annotation tool for the identification and dissemination of eukaryotic genes.
Wilkerson MD; Schlueter SD; Brendel V
Genome Biol; 2006; 7(7):R58. PubMed ID: 16859520
[TBL] [Abstract][Full Text] [Related]
17. Improved annotation of 3' untranslated regions and complex loci by combination of strand-specific direct RNA sequencing, RNA-Seq and ESTs.
Schurch NJ; Cole C; Sherstnev A; Song J; Duc C; Storey KG; McLean WH; Brown SJ; Simpson GG; Barton GJ
PLoS One; 2014; 9(4):e94270. PubMed ID: 24722185
[TBL] [Abstract][Full Text] [Related]
18. Djinn Lite: a tool for customised gene transcript modelling, annotation-data enrichment and exploration.
Teber ET; Crawford E; Bolton KB; Van Dyk D; Schofield PR; Kapoor V; Church WB
BMC Bioinformatics; 2006 Jan; 7():33. PubMed ID: 16426464
[TBL] [Abstract][Full Text] [Related]
19. Annotating functional RNAs in genomes using Infernal.
Nawrocki EP
Methods Mol Biol; 2014; 1097():163-97. PubMed ID: 24639160
[TBL] [Abstract][Full Text] [Related]
20. Plant Gene and Alternatively Spliced Variant Annotator. A plant genome annotation pipeline for rice gene and alternatively spliced variant identification with cross-species expressed sequence tag conservation from seven plant species.
Chen FC; Wang SS; Chaw SM; Huang YT; Chuang TJ
Plant Physiol; 2007 Mar; 143(3):1086-95. PubMed ID: 17220363
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
