These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

87 related articles for article (PubMed ID: 25768532)

  • 1. Protein unfolding from free-energy calculations: integration of the Gaussian network model with bond binding energies.
    Srivastava A; Granek R
    Phys Rev E Stat Nonlin Soft Matter Phys; 2015 Feb; 91(2):022708. PubMed ID: 25768532
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Temperature-induced unfolding behavior of proteins studied by tensorial elastic network model.
    Srivastava A; Granek R
    Proteins; 2016 Dec; 84(12):1767-1775. PubMed ID: 27578264
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Sufficient minimal model for DNA denaturation: Integration of harmonic scalar elasticity and bond energies.
    Singh AR; Granek R
    J Chem Phys; 2016 Oct; 145(14):144101. PubMed ID: 27782499
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Mechanical Folding and Unfolding of Protein Barnase at the Single-Molecule Level.
    Alemany A; Rey-Serra B; Frutos S; Cecconi C; Ritort F
    Biophys J; 2016 Jan; 110(1):63-74. PubMed ID: 26745410
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Cooperativity in thermal and force-induced protein unfolding: integration of crack propagation and network elasticity models.
    Srivastava A; Granek R
    Phys Rev Lett; 2013 Mar; 110(13):138101. PubMed ID: 23581376
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Protein unfolding behavior studied by elastic network model.
    Su JG; Li CH; Hao R; Chen WZ; Wang CX
    Biophys J; 2008 Jun; 94(12):4586-96. PubMed ID: 18310247
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Acid and thermal denaturation of barnase investigated by molecular dynamics simulations.
    Caflisch A; Karplus M
    J Mol Biol; 1995 Oct; 252(5):672-708. PubMed ID: 7563082
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Comparative all-atomic study of unfolding pathways for proteins chymotrypsin inhibitor 2 and barnase.
    Sheng Y; Wang W
    Phys Rev E Stat Nonlin Soft Matter Phys; 2006 Feb; 73(2 Pt 1):021915. PubMed ID: 16605370
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Topography of the free-energy landscape probed via mechanical unfolding of proteins.
    Kirmizialtin S; Huang L; Makarov DE
    J Chem Phys; 2005 Jun; 122(23):234915. PubMed ID: 16008495
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Simulation of the mechanical unfolding of ubiquitin: probing different unfolding reaction coordinates by changing the pulling geometry.
    Li PC; Makarov DE
    J Chem Phys; 2004 Sep; 121(10):4826-32. PubMed ID: 15332917
    [TBL] [Abstract][Full Text] [Related]  

  • 11. The Intrinsic Dynamics and Unfolding Process of an Antibody Fab Fragment Revealed by Elastic Network Model.
    Su JG; Zhang X; Han XM; Zhao SX; Li CH
    Int J Mol Sci; 2015 Dec; 16(12):29720-31. PubMed ID: 26690429
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Ripping RNA by Force Using Gaussian Network Models.
    Hyeon C; Thirumalai D
    J Phys Chem B; 2017 Apr; 121(15):3515-3522. PubMed ID: 28423909
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Dissimilarity in the reductive unfolding pathways of two ribonuclease homologues.
    Narayan M; Xu G; Ripoll DR; Zhai H; Breuker K; Wanjalla C; Leung HJ; Navon A; Welker E; McLafferty FW; Scheraga HA
    J Mol Biol; 2004 May; 338(4):795-809. PubMed ID: 15099746
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Loading device effect on protein unfolding mechanics.
    Yoon G; Na S; Eom K
    J Chem Phys; 2012 Jul; 137(2):025102. PubMed ID: 22803564
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Thermodynamics and kinetics of unfolding of the thermostable trimeric adenylate kinase from the archaeon Sulfolobus acidocaldarius.
    Backmann J; Schäfer G; Wyns L; Bönisch H
    J Mol Biol; 1998 Dec; 284(3):817-33. PubMed ID: 9826518
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Temperature-dependent downhill unfolding of ubiquitin. II. Modeling the free energy surface.
    Chung HS; Tokmakoff A
    Proteins; 2008 Jul; 72(1):488-97. PubMed ID: 18384149
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Identification and characterization of the unfolding transition state of chymotrypsin inhibitor 2 by molecular dynamics simulations.
    Li A; Daggett V
    J Mol Biol; 1996 Mar; 257(2):412-29. PubMed ID: 8609633
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Unfolding dynamics of the protein ubiquitin: insight from simulation.
    Dastidar SG; Mukhopadhyay C
    Phys Rev E Stat Nonlin Soft Matter Phys; 2005 Nov; 72(5 Pt 1):051928. PubMed ID: 16383666
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Reversible mechanical unfolding of single ubiquitin molecules.
    Chyan CL; Lin FC; Peng H; Yuan JM; Chang CH; Lin SH; Yang G
    Biophys J; 2004 Dec; 87(6):3995-4006. PubMed ID: 15361414
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Conformational evolution of ubiquitin ions in electrospray mass spectrometry: molecular dynamics simulations at gradually increasing temperatures.
    Segev E; Wyttenbach T; Bowers MT; Gerber RB
    Phys Chem Chem Phys; 2008 Jun; 10(21):3077-82. PubMed ID: 18688371
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.