These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

158 related articles for article (PubMed ID: 25779051)

  • 1. What matters for lac repressor search in vivo--sliding, hopping, intersegment transfer, crowding on DNA or recognition?
    Mahmutovic A; Berg OG; Elf J
    Nucleic Acids Res; 2015 Apr; 43(7):3454-64. PubMed ID: 25779051
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Method for the analysis of contribution of sliding and hopping to a facilitated diffusion of DNA-binding protein: Application to in vivo data.
    Tabaka M; Burdzy K; Hołyst R
    Phys Rev E Stat Nonlin Soft Matter Phys; 2015 Aug; 92(2):022721. PubMed ID: 26382446
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Thermodynamics of the interactions of lac repressor with variants of the symmetric lac operator: effects of converting a consensus site to a non-specific site.
    Frank DE; Saecker RM; Bond JP; Capp MW; Tsodikov OV; Melcher SE; Levandoski MM; Record MT
    J Mol Biol; 1997 Apr; 267(5):1186-206. PubMed ID: 9150406
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Insights into the sliding movement of the lac repressor nonspecifically bound to DNA.
    Furini S; Domene C; Cavalcanti S
    J Phys Chem B; 2010 Feb; 114(6):2238-45. PubMed ID: 20095570
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Transcription-factor binding and sliding on DNA studied using micro- and macroscopic models.
    Marklund EG; Mahmutovic A; Berg OG; Hammar P; van der Spoel D; Fange D; Elf J
    Proc Natl Acad Sci U S A; 2013 Dec; 110(49):19796-801. PubMed ID: 24222688
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Sliding of a single lac repressor protein along DNA is tuned by DNA sequence and molecular switching.
    Tempestini A; Monico C; Gardini L; Vanzi F; Pavone FS; Capitanio M
    Nucleic Acids Res; 2018 Jun; 46(10):5001-5011. PubMed ID: 29584872
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Sliding and target location of DNA-binding proteins: an NMR view of the lac repressor system.
    Loth K; Gnida M; Romanuka J; Kaptein R; Boelens R
    J Biomol NMR; 2013 May; 56(1):41-9. PubMed ID: 23568265
    [TBL] [Abstract][Full Text] [Related]  

  • 8. DNA recognition process of the lactose repressor protein studied via metadynamics and umbrella sampling simulations.
    Furini S; Domene C
    J Phys Chem B; 2014 Nov; 118(46):13059-65. PubMed ID: 25341013
    [TBL] [Abstract][Full Text] [Related]  

  • 9. DNA surface exploration and operator bypassing during target search.
    Marklund E; van Oosten B; Mao G; Amselem E; Kipper K; Sabantsev A; Emmerich A; Globisch D; Zheng X; Lehmann LC; Berg OG; Johansson M; Elf J; Deindl S
    Nature; 2020 Jul; 583(7818):858-861. PubMed ID: 32581356
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Wrapping of flanking non-operator DNA in lac repressor-operator complexes: implications for DNA looping.
    Tsodikov OV; Saecker RM; Melcher SE; Levandoski MM; Frank DE; Capp MW; Record MT
    J Mol Biol; 1999 Dec; 294(3):639-55. PubMed ID: 10610786
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Conformational Change of Transcription Factors from Search to Specific Binding: A
    Lüking M; Elf J; Levy Y
    J Phys Chem B; 2022 Dec; 126(48):9971-9984. PubMed ID: 36416228
    [TBL] [Abstract][Full Text] [Related]  

  • 12. How do site-specific DNA-binding proteins find their targets?
    Halford SE; Marko JF
    Nucleic Acids Res; 2004; 32(10):3040-52. PubMed ID: 15178741
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Facilitated diffusion framework for transcription factor search with conformational changes.
    Cartailler J; Reingruber J
    Phys Biol; 2015 Jul; 12(4):046012. PubMed ID: 26200216
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Single molecule measurements of repressor protein 1D diffusion on DNA.
    Wang YM; Austin RH; Cox EC
    Phys Rev Lett; 2006 Jul; 97(4):048302. PubMed ID: 16907618
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Mechanism of Facilitated Diffusion during a DNA Search in Crowded Environments.
    Krepel D; Gomez D; Klumpp S; Levy Y
    J Phys Chem B; 2016 Nov; 120(43):11113-11122. PubMed ID: 27723976
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Sliding of proteins non-specifically bound to DNA: Brownian dynamics studies with coarse-grained protein and DNA models.
    Ando T; Skolnick J
    PLoS Comput Biol; 2014 Dec; 10(12):e1003990. PubMed ID: 25504215
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Use of urea and glycine betaine to quantify coupled folding and probe the burial of DNA phosphates in lac repressor-lac operator binding.
    Hong J; Capp MW; Saecker RM; Record MT
    Biochemistry; 2005 Dec; 44(51):16896-911. PubMed ID: 16363803
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Operator search by mutant Lac repressors.
    Barker A; Fickert R; Oehler S; Müller-hill B
    J Mol Biol; 1998 May; 278(3):549-58. PubMed ID: 9600838
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Strong DNA binding by covalently linked dimeric Lac headpiece: evidence for the crucial role of the hinge helices.
    Kalodimos CG; Folkers GE; Boelens R; Kaptein R
    Proc Natl Acad Sci U S A; 2001 May; 98(11):6039-44. PubMed ID: 11353825
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Quantitative influence of macromolecular crowding on gene regulation kinetics.
    Tabaka M; Kalwarczyk T; Hołyst R
    Nucleic Acids Res; 2014 Jan; 42(2):727-38. PubMed ID: 24121687
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.