BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

144 related articles for article (PubMed ID: 25785185)

  • 1. Ontorat: automatic generation of new ontology terms, annotations, and axioms based on ontology design patterns.
    Xiang Z; Zheng J; Lin Y; He Y
    J Biomed Semantics; 2015; 6():4. PubMed ID: 25785185
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Empowering standardization of cancer vaccines through ontology: enhanced modeling and data analysis.
    Zheng J; Li X; Masci AM; Kahn H; Huffman A; Asfaw E; Pan Y; Guo J; He V; Song J; Seleznev AI; Lin AY; He Y
    J Biomed Semantics; 2024 Jun; 15(1):12. PubMed ID: 38890666
    [TBL] [Abstract][Full Text] [Related]  

  • 3. The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability.
    He Y; Xiang Z; Zheng J; Lin Y; Overton JA; Ong E
    J Biomed Semantics; 2018 Jan; 9(1):3. PubMed ID: 29329592
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Proposed actions are no actions: re-modeling an ontology design pattern with a realist top-level ontology.
    Seddig-Raufie D; Jansen L; Schober D; Boeker M; Grewe N; Schulz S
    J Biomed Semantics; 2012 Sep; 3 Suppl 2(Suppl 2):S2. PubMed ID: 23046561
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A drug target slim: using gene ontology and gene ontology annotations to navigate protein-ligand target space in ChEMBL.
    Mutowo P; Bento AP; Dedman N; Gaulton A; Hersey A; Lomax J; Overington JP
    J Biomed Semantics; 2016 Sep; 7(1):59. PubMed ID: 27678076
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Ontology design patterns to disambiguate relations between genes and gene products in GENIA.
    Hoehndorf R; Ngonga Ngomo AC; Pyysalo S; Ohta T; Oellrich A; Rebholz-Schuhmann D
    J Biomed Semantics; 2011 Oct; 2 Suppl 5(Suppl 5):S1. PubMed ID: 22166341
    [TBL] [Abstract][Full Text] [Related]  

  • 7. OntologyWidget - a reusable, embeddable widget for easily locating ontology terms.
    Beauheim CC; Wymore F; Nitzberg M; Zachariah ZK; Jin H; Skene JH; Ball CA; Sherlock G
    BMC Bioinformatics; 2007 Sep; 8():338. PubMed ID: 17854506
    [TBL] [Abstract][Full Text] [Related]  

  • 8. TermGenie - a web-application for pattern-based ontology class generation.
    Dietze H; Berardini TZ; Foulger RE; Hill DP; Lomax J; Osumi-Sutherland D; Roncaglia P; Mungall CJ
    J Biomed Semantics; 2014; 5():48. PubMed ID: 25937883
    [TBL] [Abstract][Full Text] [Related]  

  • 9. MicrO: an ontology of phenotypic and metabolic characters, assays, and culture media found in prokaryotic taxonomic descriptions.
    Blank CE; Cui H; Moore LR; Walls RL
    J Biomed Semantics; 2016; 7():18. PubMed ID: 27076900
    [TBL] [Abstract][Full Text] [Related]  

  • 10. OntoFox: web-based support for ontology reuse.
    Xiang Z; Courtot M; Brinkman RR; Ruttenberg A; He Y
    BMC Res Notes; 2010 Jun; 3():175. PubMed ID: 20569493
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Formal axioms in biomedical ontologies improve analysis and interpretation of associated data.
    Smaili FZ; Gao X; Hoehndorf R
    Bioinformatics; 2020 Apr; 36(7):2229-2236. PubMed ID: 31821406
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Analysing Syntactic Regularities and Irregularities in SNOMED-CT.
    Mikroyannidi E; Stevens R; Iannone L; Rector A
    J Biomed Semantics; 2012 Dec; 3(1):8. PubMed ID: 23244503
    [TBL] [Abstract][Full Text] [Related]  

  • 13. SORTA: a system for ontology-based re-coding and technical annotation of biomedical phenotype data.
    Pang C; Sollie A; Sijtsma A; Hendriksen D; Charbon B; de Haan M; de Boer T; Kelpin F; Jetten J; van der Velde JK; Smidt N; Sijmons R; Hillege H; Swertz MA
    Database (Oxford); 2015; 2015():. PubMed ID: 26385205
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Development and application of an interaction network ontology for literature mining of vaccine-associated gene-gene interactions.
    Hur J; Özgür A; Xiang Z; He Y
    J Biomed Semantics; 2015; 6():2. PubMed ID: 25785184
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Discovery of Emerging Design Patterns in Ontologies Using Tree Mining.
    Ławrynowicz A; Potoniec J; Robaczyk M; Tudorache T
    Semant Web; 2018; 9(4):517-544. PubMed ID: 30505251
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Applications of ontology design patterns in biomedical ontologies.
    Mortensen JM; Horridge M; Musen MA; Noy NF
    AMIA Annu Symp Proc; 2012; 2012():643-52. PubMed ID: 23304337
    [TBL] [Abstract][Full Text] [Related]  

  • 17. VariOtator, a Software Tool for Variation Annotation with the Variation Ontology.
    Schaafsma GC; Vihinen M
    Hum Mutat; 2016 Apr; 37(4):344-9. PubMed ID: 26773573
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Evaluation of BioCreAtIvE assessment of task 2.
    Blaschke C; Leon EA; Krallinger M; Valencia A
    BMC Bioinformatics; 2005; 6 Suppl 1(Suppl 1):S16. PubMed ID: 15960828
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Improving the Sequence Ontology terminology for genomic variant annotation.
    Cunningham F; Moore B; Ruiz-Schultz N; Ritchie GR; Eilbeck K
    J Biomed Semantics; 2015; 6():32. PubMed ID: 26229585
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A document-centric approach for developing the tolAPC ontology.
    Blfgeh A; Warrender J; Hilkens CMU; Lord P
    J Biomed Semantics; 2017 Nov; 8(1):54. PubMed ID: 29179777
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.