These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
345 related articles for article (PubMed ID: 25799319)
1. Inverse thio effects in the hepatitis delta virus ribozyme reveal that the reaction pathway is controlled by metal ion charge density. Thaplyal P; Ganguly A; Hammes-Schiffer S; Bevilacqua PC Biochemistry; 2015 Mar; 54(12):2160-75. PubMed ID: 25799319 [TBL] [Abstract][Full Text] [Related]
3. Thio effects and an unconventional metal ion rescue in the genomic hepatitis delta virus ribozyme. Thaplyal P; Ganguly A; Golden BL; Hammes-Schiffer S; Bevilacqua PC Biochemistry; 2013 Sep; 52(37):6499-514. PubMed ID: 24001219 [TBL] [Abstract][Full Text] [Related]
4. Quantum mechanical/molecular mechanical free energy simulations of the self-cleavage reaction in the hepatitis delta virus ribozyme. Ganguly A; Thaplyal P; Rosta E; Bevilacqua PC; Hammes-Schiffer S J Am Chem Soc; 2014 Jan; 136(4):1483-96. PubMed ID: 24383543 [TBL] [Abstract][Full Text] [Related]
5. Mechanistic characterization of the HDV genomic ribozyme: classifying the catalytic and structural metal ion sites within a multichannel reaction mechanism. Nakano S; Cerrone AL; Bevilacqua PC Biochemistry; 2003 Mar; 42(10):2982-94. PubMed ID: 12627964 [TBL] [Abstract][Full Text] [Related]
6. Catalytic cleavage of cis- and trans-acting antigenomic delta ribozymes in the presence of various divalent metal ions. Wrzesinski J; Legiewicz M; Smólska B; Ciesiolka J Nucleic Acids Res; 2001 Nov; 29(21):4482-92. PubMed ID: 11691936 [TBL] [Abstract][Full Text] [Related]
7. Mechanistic characterization of the HDV genomic ribozyme: assessing the catalytic and structural contributions of divalent metal ions within a multichannel reaction mechanism. Nakano S; Proctor DJ; Bevilacqua PC Biochemistry; 2001 Oct; 40(40):12022-38. PubMed ID: 11580278 [TBL] [Abstract][Full Text] [Related]
8. Mechanistic characterization of the HDV genomic ribozyme: solvent isotope effects and proton inventories in the absence of divalent metal ions support C75 as the general acid. Cerrone-Szakal AL; Siegfried NA; Bevilacqua PC J Am Chem Soc; 2008 Nov; 130(44):14504-20. PubMed ID: 18842044 [TBL] [Abstract][Full Text] [Related]
9. Structural roles of monovalent cations in the HDV ribozyme. Ke A; Ding F; Batchelor JD; Doudna JA Structure; 2007 Mar; 15(3):281-7. PubMed ID: 17355864 [TBL] [Abstract][Full Text] [Related]
10. Two distinct catalytic strategies in the hepatitis δ virus ribozyme cleavage reaction. Golden BL Biochemistry; 2011 Nov; 50(44):9424-33. PubMed ID: 22003985 [TBL] [Abstract][Full Text] [Related]
11. Existence of efficient divalent metal ion-catalyzed and inefficient divalent metal ion-independent channels in reactions catalyzed by a hammerhead ribozyme. Zhou JM; Zhou DM; Takagi Y; Kasai Y; Inoue A; Baba T; Taira K Nucleic Acids Res; 2002 Jun; 30(11):2374-82. PubMed ID: 12034824 [TBL] [Abstract][Full Text] [Related]
12. Self-cleavage activity of the genomic HDV ribozyme in the presence of various divalent metal ions. Suh YA; Kumar PK; Taira K; Nishikawa S Nucleic Acids Res; 1993 Jul; 21(14):3277-80. PubMed ID: 8341602 [TBL] [Abstract][Full Text] [Related]
13. A pH-sensitive RNA tertiary interaction affects self-cleavage activity of the HDV ribozymes in the absence of added divalent metal ion. Wadkins TS; Shih I; Perrotta AT; Been MD J Mol Biol; 2001 Feb; 305(5):1045-55. PubMed ID: 11162113 [TBL] [Abstract][Full Text] [Related]
14. Assessment of metal-assisted nucleophile activation in the hepatitis delta virus ribozyme from molecular simulation and 3D-RISM. Radak BK; Lee TS; Harris ME; York DM RNA; 2015 Sep; 21(9):1566-77. PubMed ID: 26170378 [TBL] [Abstract][Full Text] [Related]
15. Analysis of the cleavage reaction of a trans-acting human hepatitis delta virus ribozyme. Fauzi H; Kawakami J; Nishikawa F; Nishikawa S Nucleic Acids Res; 1997 Aug; 25(15):3124-30. PubMed ID: 9224614 [TBL] [Abstract][Full Text] [Related]
16. Energetic contribution of non-essential 5' sequence to catalysis in a hepatitis delta virus ribozyme. Shih Ih ; Been MD EMBO J; 2001 Sep; 20(17):4884-91. PubMed ID: 11532952 [TBL] [Abstract][Full Text] [Related]
17. Terbium-mediated footprinting probes a catalytic conformational switch in the antigenomic hepatitis delta virus ribozyme. Harris DA; Tinsley RA; Walter NG J Mol Biol; 2004 Aug; 341(2):389-403. PubMed ID: 15276831 [TBL] [Abstract][Full Text] [Related]
19. Catalytic strategies of the hepatitis delta virus ribozymes. Shih IH; Been MD Annu Rev Biochem; 2002; 71():887-917. PubMed ID: 12045114 [TBL] [Abstract][Full Text] [Related]
20. Structural dynamics of precursor and product of the RNA enzyme from the hepatitis delta virus as revealed by molecular dynamics simulations. Krasovska MV; Sefcikova J; Spacková N; Sponer J; Walter NG J Mol Biol; 2005 Aug; 351(4):731-48. PubMed ID: 16045932 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]