These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
108 related articles for article (PubMed ID: 25811026)
41. SubSeqer: a graph-based approach for the detection and identification of repetitive elements in low-complexity sequences. He D; Parkinson J Bioinformatics; 2008 Apr; 24(7):1016-7. PubMed ID: 18304932 [TBL] [Abstract][Full Text] [Related]
42. GATA: a graphic alignment tool for comparative sequence analysis. Nix DA; Eisen MB BMC Bioinformatics; 2005 Jan; 6():9. PubMed ID: 15655071 [TBL] [Abstract][Full Text] [Related]
43. CGAT: a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between closely related genomes. Uchiyama I; Higuchi T; Kobayashi I BMC Bioinformatics; 2006 Oct; 7():472. PubMed ID: 17062155 [TBL] [Abstract][Full Text] [Related]
44. DNPTrapper: an assembly editing tool for finishing and analysis of complex repeat regions. Arner E; Tammi MT; Tran AN; Kindlund E; Andersson B BMC Bioinformatics; 2006 Mar; 7():155. PubMed ID: 16549006 [TBL] [Abstract][Full Text] [Related]
45. A method for fast database search for all k-nucleotide repeats. Benson G; Waterman MS Nucleic Acids Res; 1994 Nov; 22(22):4828-36. PubMed ID: 7984436 [TBL] [Abstract][Full Text] [Related]
46. detectIR: a novel program for detecting perfect and imperfect inverted repeats using complex numbers and vector calculation. Ye C; Ji G; Li L; Liang C PLoS One; 2014; 9(11):e113349. PubMed ID: 25409465 [TBL] [Abstract][Full Text] [Related]
47. Geno2proteo, a Tool for Batch Retrieval of DNA and Protein Sequences from Any Genomic or Protein Regions. Li Y; Aguilar-Martinez E; Sharrocks AD J Integr Bioinform; 2019 Jul; 16(3):. PubMed ID: 31301672 [TBL] [Abstract][Full Text] [Related]
48. Improving hash-q exact string matching algorithm with perfect hashing for DNA sequences. Karcioglu AA; Bulut H Comput Biol Med; 2021 Apr; 131():104292. PubMed ID: 33662682 [TBL] [Abstract][Full Text] [Related]
49. REPuter: fast computation of maximal repeats in complete genomes. Kurtz S; Schleiermacher C Bioinformatics; 1999 May; 15(5):426-7. PubMed ID: 10366664 [TBL] [Abstract][Full Text] [Related]
50. The RIPper, a web-based tool for genome-wide quantification of Repeat-Induced Point (RIP) mutations. van Wyk S; Harrison CH; Wingfield BD; De Vos L; van der Merwe NA; Steenkamp ET PeerJ; 2019; 7():e7447. PubMed ID: 31523495 [TBL] [Abstract][Full Text] [Related]
51. Using OrthoMCL to assign proteins to OrthoMCL-DB groups or to cluster proteomes into new ortholog groups. Fischer S; Brunk BP; Chen F; Gao X; Harb OS; Iodice JB; Shanmugam D; Roos DS; Stoeckert CJ Curr Protoc Bioinformatics; 2011 Sep; Chapter 6():6.12.1-6.12.19. PubMed ID: 21901743 [TBL] [Abstract][Full Text] [Related]
52. ParSe 2.0: A web tool to identify drivers of protein phase separation at the proteome level. Wilson C; Lewis KA; Fitzkee NC; Hough LE; Whitten ST Protein Sci; 2023 Sep; 32(9):e4756. PubMed ID: 37574757 [TBL] [Abstract][Full Text] [Related]
53. Efficient algorithms for searching for exact repetition of nucleotide sequences. Nussinov R J Mol Evol; 1983; 19(3-4):283-5. PubMed ID: 6887269 [TBL] [Abstract][Full Text] [Related]
54. Active motif finder - a bio-tool based on mutational structures in DNA sequences. Udayakumar M; Shanmuga-Priya P; Hemavathi K; Seenivasagam R J Biomed Res; 2011 Nov; 25(6):444-8. PubMed ID: 23554723 [TBL] [Abstract][Full Text] [Related]
55. PHYSICO2: an UNIX based standalone procedure for computation of physicochemical, window-dependent and substitution based evolutionary properties of protein sequences along with automated block preparation tool, version 2. Banerjee S; Gupta PS; Nayek A; Das S; Sur VP; Seth P; Islam RN; Bandyopadhyay AK Bioinformation; 2015; 11(7):366-8. PubMed ID: 26339154 [TBL] [Abstract][Full Text] [Related]
56. Entropic Profiler - detection of conservation in genomes using information theory. Fernandes F; Freitas AT; Almeida JS; Vinga S BMC Res Notes; 2009 May; 2():72. PubMed ID: 19416538 [TBL] [Abstract][Full Text] [Related]
57. PolyX2: Fast Detection of Homorepeats in Large Protein Datasets. Mier P; Andrade-Navarro MA Genes (Basel); 2022 Apr; 13(5):. PubMed ID: 35627143 [TBL] [Abstract][Full Text] [Related]