187 related articles for article (PubMed ID: 25812743)
1. HAlign: Fast multiple similar DNA/RNA sequence alignment based on the centre star strategy.
Zou Q; Hu Q; Guo M; Wang G
Bioinformatics; 2015 Aug; 31(15):2475-81. PubMed ID: 25812743
[TBL] [Abstract][Full Text] [Related]
2. CMSA: a heterogeneous CPU/GPU computing system for multiple similar RNA/DNA sequence alignment.
Chen X; Wang C; Tang S; Yu C; Zou Q
BMC Bioinformatics; 2017 Jun; 18(1):315. PubMed ID: 28646874
[TBL] [Abstract][Full Text] [Related]
3. Multiple Sequence Alignment Based on a Suffix Tree and Center-Star Strategy: A Linear Method for Multiple Nucleotide Sequence Alignment on Spark Parallel Framework.
Su W; Liao X; Lu Y; Zou Q; Peng S
J Comput Biol; 2017 Dec; 24(12):1230-1242. PubMed ID: 29116822
[TBL] [Abstract][Full Text] [Related]
4. Multiple alignment of DNA sequences with MAFFT.
Katoh K; Asimenos G; Toh H
Methods Mol Biol; 2009; 537():39-64. PubMed ID: 19378139
[TBL] [Abstract][Full Text] [Related]
5. DNA Multiple Sequence Alignment Guided by Protein Domains: The MSA-PAD 2.0 Method.
Balech B; Monaco A; Perniola M; Santamaria M; Donvito G; Vicario S; Maggi G; Pesole G
Methods Mol Biol; 2018; 1746():173-180. PubMed ID: 29492894
[TBL] [Abstract][Full Text] [Related]
6. A novel fast multiple nucleotide sequence alignment method based on FM-index.
Liu H; Zou Q; Xu Y
Brief Bioinform; 2022 Jan; 23(1):. PubMed ID: 34893794
[TBL] [Abstract][Full Text] [Related]
7. HAlign 3: Fast Multiple Alignment of Ultra-Large Numbers of Similar DNA/RNA Sequences.
Tang F; Chao J; Wei Y; Yang F; Zhai Y; Xu L; Zou Q
Mol Biol Evol; 2022 Aug; 39(8):. PubMed ID: 35915051
[TBL] [Abstract][Full Text] [Related]
8. Multiple structural alignment and clustering of RNA sequences.
Torarinsson E; Havgaard JH; Gorodkin J
Bioinformatics; 2007 Apr; 23(8):926-32. PubMed ID: 17324941
[TBL] [Abstract][Full Text] [Related]
9. CentroidAlign: fast and accurate aligner for structured RNAs by maximizing expected sum-of-pairs score.
Hamada M; Sato K; Kiryu H; Mituyama T; Asai K
Bioinformatics; 2009 Dec; 25(24):3236-43. PubMed ID: 19808876
[TBL] [Abstract][Full Text] [Related]
10. Biclustering as a method for RNA local multiple sequence alignment.
Wang S; Gutell RR; Miranker DP
Bioinformatics; 2007 Dec; 23(24):3289-96. PubMed ID: 17921494
[TBL] [Abstract][Full Text] [Related]
11. SPARK-MSNA: Efficient algorithm on Apache Spark for aligning multiple similar DNA/RNA sequences with supervised learning.
Vineetha V; Biji CL; Nair AS
Sci Rep; 2019 Apr; 9(1):6631. PubMed ID: 31036850
[TBL] [Abstract][Full Text] [Related]
12. Class of multiple sequence alignment algorithm affects genomic analysis.
Blackburne BP; Whelan S
Mol Biol Evol; 2013 Mar; 30(3):642-53. PubMed ID: 23144040
[TBL] [Abstract][Full Text] [Related]
13. MSA-PAD: DNA multiple sequence alignment framework based on PFAM accessed domain information.
Balech B; Vicario S; Donvito G; Monaco A; Notarangelo P; Pesole G
Bioinformatics; 2015 Aug; 31(15):2571-3. PubMed ID: 25819080
[TBL] [Abstract][Full Text] [Related]
14. Multiple sequence alignment using partial order graphs.
Lee C; Grasso C; Sharlow MF
Bioinformatics; 2002 Mar; 18(3):452-64. PubMed ID: 11934745
[TBL] [Abstract][Full Text] [Related]
15. Protein multiple sequence alignment benchmarking through secondary structure prediction.
Le Q; Sievers F; Higgins DG
Bioinformatics; 2017 May; 33(9):1331-1337. PubMed ID: 28093407
[TBL] [Abstract][Full Text] [Related]
16. WMSA: a novel method for multiple sequence alignment of DNA sequences.
Wei Y; Zou Q; Tang F; Yu L
Bioinformatics; 2022 Nov; 38(22):5019-5025. PubMed ID: 36179076
[TBL] [Abstract][Full Text] [Related]
17. HBLAST: Parallelised sequence similarity--A Hadoop MapReducable basic local alignment search tool.
O'Driscoll A; Belogrudov V; Carroll J; Kropp K; Walsh P; Ghazal P; Sleator RD
J Biomed Inform; 2015 Apr; 54():58-64. PubMed ID: 25625550
[TBL] [Abstract][Full Text] [Related]
18. HAlign-II: efficient ultra-large multiple sequence alignment and phylogenetic tree reconstruction with distributed and parallel computing.
Wan S; Zou Q
Algorithms Mol Biol; 2017; 12():25. PubMed ID: 29026435
[TBL] [Abstract][Full Text] [Related]
19. SinicView: a visualization environment for comparisons of multiple nucleotide sequence alignment tools.
Shih AC; Lee DT; Lin L; Peng CL; Chen SH; Wu YW; Wong CY; Chou MY; Shiao TC; Hsieh MF
BMC Bioinformatics; 2006 Mar; 7():103. PubMed ID: 16509994
[TBL] [Abstract][Full Text] [Related]
20. Reconstructing evolutionary trees in parallel for massive sequences.
Zou Q; Wan S; Zeng X; Ma ZS
BMC Syst Biol; 2017 Dec; 11(Suppl 6):100. PubMed ID: 29297337
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]