762 related articles for article (PubMed ID: 25827894)
1. Transcriptome-wide identification of in vivo interactions between RNAs and RNA-binding proteins by RIP and PAR-CLIP assays.
González-Buendía E; Saldaña-Meyer R; Meier K; Recillas-Targa F
Methods Mol Biol; 2015; 1288():413-28. PubMed ID: 25827894
[TBL] [Abstract][Full Text] [Related]
2. Transcriptome-wide Identification of RNA-binding Protein Binding Sites Using Photoactivatable-Ribonucleoside-Enhanced Crosslinking Immunoprecipitation (PAR-CLIP).
Maatz H; Kolinski M; Hubner N; Landthaler M
Curr Protoc Mol Biol; 2017 Apr; 118():27.6.1-27.6.19. PubMed ID: 28369676
[TBL] [Abstract][Full Text] [Related]
3. Computational Analysis of RNA-Protein Interactions via Deep Sequencing.
Li L; Förstner KU; Chao Y
Methods Mol Biol; 2018; 1751():171-182. PubMed ID: 29508297
[TBL] [Abstract][Full Text] [Related]
4. Cross-linking and immunoprecipitation of nuclear RNA-binding proteins.
Li Q; Uemura Y; Kawahara Y
Methods Mol Biol; 2015; 1262():247-63. PubMed ID: 25555586
[TBL] [Abstract][Full Text] [Related]
5. PAR-CLIP and streamlined small RNA cDNA library preparation protocol for the identification of RNA binding protein target sites.
Benhalevy D; McFarland HL; Sarshad AA; Hafner M
Methods; 2017 Apr; 118-119():41-49. PubMed ID: 27871973
[TBL] [Abstract][Full Text] [Related]
6. PAR-CLIP: A Method for Transcriptome-Wide Identification of RNA Binding Protein Interaction Sites.
Danan C; Manickavel S; Hafner M
Methods Mol Biol; 2016; 1358():153-73. PubMed ID: 26463383
[TBL] [Abstract][Full Text] [Related]
7. PAR-CLIP for Discovering Target Sites of RNA-Binding Proteins.
Garzia A; Morozov P; Sajek M; Meyer C; Tuschl T
Methods Mol Biol; 2018; 1720():55-75. PubMed ID: 29236251
[TBL] [Abstract][Full Text] [Related]
8. Mapping the Transcriptome-Wide Landscape of RBP Binding Sites Using gPAR-CLIP-seq: Bioinformatic Analysis.
Freeberg MA; Kim JK
Methods Mol Biol; 2016; 1361():91-104. PubMed ID: 26483018
[TBL] [Abstract][Full Text] [Related]
9. PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins.
Hafner M; Landthaler M; Burger L; Khorshid M; Hausser J; Berninger P; Rothballer A; Ascano M; Jungkamp AC; Munschauer M; Ulrich A; Wardle GS; Dewell S; Zavolan M; Tuschl T
J Vis Exp; 2010 Jul; (41):. PubMed ID: 20644507
[TBL] [Abstract][Full Text] [Related]
10. DO-RIP-seq to quantify RNA binding sites transcriptome-wide.
Nicholson CO; Friedersdorf MB; Bisogno LS; Keene JD
Methods; 2017 Apr; 118-119():16-23. PubMed ID: 27840290
[TBL] [Abstract][Full Text] [Related]
11. CLIPdb: a CLIP-seq database for protein-RNA interactions.
Yang YC; Di C; Hu B; Zhou M; Liu Y; Song N; Li Y; Umetsu J; Lu ZJ
BMC Genomics; 2015 Feb; 16(1):51. PubMed ID: 25652745
[TBL] [Abstract][Full Text] [Related]
12. Transcriptome-wide identification of RNA binding sites by CLIP-seq.
Murigneux V; Saulière J; Roest Crollius H; Le Hir H
Methods; 2013 Sep; 63(1):32-40. PubMed ID: 23545196
[TBL] [Abstract][Full Text] [Related]
13. Detection and Analysis of Long Noncoding RNAs.
Lai F; Blumenthal E; Shiekhattar R
Methods Enzymol; 2016; 573():421-44. PubMed ID: 27372765
[TBL] [Abstract][Full Text] [Related]
14. Optimization of PAR-CLIP for transcriptome-wide identification of binding sites of RNA-binding proteins.
Garzia A; Meyer C; Morozov P; Sajek M; Tuschl T
Methods; 2017 Apr; 118-119():24-40. PubMed ID: 27765618
[TBL] [Abstract][Full Text] [Related]
15. Mapping the Transcriptome-Wide Landscape of RBP Binding Sites Using gPAR-CLIP-seq: Experimental Procedures.
Han T; Kim JK
Methods Mol Biol; 2016; 1361():77-90. PubMed ID: 26483017
[TBL] [Abstract][Full Text] [Related]
16. PAR-CLIP: A Method for Transcriptome-Wide Identification of RNA Binding Protein Interaction Sites.
Danan C; Manickavel S; Hafner M
Methods Mol Biol; 2022; 2404():167-188. PubMed ID: 34694609
[TBL] [Abstract][Full Text] [Related]
17. A Pipeline for PAR-CLIP Data Analysis.
Jens M
Methods Mol Biol; 2016; 1358():197-207. PubMed ID: 26463385
[TBL] [Abstract][Full Text] [Related]
18. Identification of Transcriptional Regulators That Bind to Long Noncoding RNAs by RNA Pull-Down and RNA Immunoprecipitation.
Ruan X; Li P; Cao H
Methods Mol Biol; 2018; 1783():185-191. PubMed ID: 29767363
[TBL] [Abstract][Full Text] [Related]
19. Analysis of Interaction Between Long Noncoding RNAs and Protein by RNA Immunoprecipitation in Arabidopsis.
Seo JS; Chua NH
Methods Mol Biol; 2019; 1933():289-295. PubMed ID: 30945193
[TBL] [Abstract][Full Text] [Related]
20. omniCLIP: probabilistic identification of protein-RNA interactions from CLIP-seq data.
Drewe-Boss P; Wessels HH; Ohler U
Genome Biol; 2018 Nov; 19(1):183. PubMed ID: 30384847
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]