306 related articles for article (PubMed ID: 25846136)
1. Differential dynamics of RAS isoforms in GDP- and GTP-bound states.
Kapoor A; Travesset A
Proteins; 2015 Jun; 83(6):1091-106. PubMed ID: 25846136
[TBL] [Abstract][Full Text] [Related]
2. Mechanism of the guanine nucleotide exchange reaction of Ras GTPase--evidence for a GTP/GDP displacement model.
Zhang B; Zhang Y; Shacter E; Zheng Y
Biochemistry; 2005 Feb; 44(7):2566-76. PubMed ID: 15709769
[TBL] [Abstract][Full Text] [Related]
3. The distinct conformational dynamics of K-Ras and H-Ras A59G.
Lukman S; Grant BJ; Gorfe AA; Grant GH; McCammon JA
PLoS Comput Biol; 2010 Sep; 6(9):. PubMed ID: 20838576
[TBL] [Abstract][Full Text] [Related]
4. Nucleotide binding switches the information flow in ras GTPases.
Raimondi F; Portella G; Orozco M; Fanelli F
PLoS Comput Biol; 2011 Mar; 7(3):e1001098. PubMed ID: 21390270
[TBL] [Abstract][Full Text] [Related]
5. Mechanism of the exchange reaction in HRAS from multiscale modeling.
Kapoor A; Travesset A
PLoS One; 2014; 9(10):e108846. PubMed ID: 25272152
[TBL] [Abstract][Full Text] [Related]
6. Relation between the conformational heterogeneity and reaction cycle of Ras: molecular simulation of Ras.
Kobayashi C; Saito S
Biophys J; 2010 Dec; 99(11):3726-34. PubMed ID: 21112297
[TBL] [Abstract][Full Text] [Related]
7. Structural and functional analysis of a mutant Ras protein that is insensitive to nitric oxide activation.
Mott HR; Carpenter JW; Campbell SL
Biochemistry; 1997 Mar; 36(12):3640-4. PubMed ID: 9132016
[TBL] [Abstract][Full Text] [Related]
8. The structural basis for the transition from Ras-GTP to Ras-GDP.
Hall BE; Bar-Sagi D; Nassar N
Proc Natl Acad Sci U S A; 2002 Sep; 99(19):12138-42. PubMed ID: 12213964
[TBL] [Abstract][Full Text] [Related]
9. Mapping the nucleotide and isoform-dependent structural and dynamical features of Ras proteins.
Gorfe AA; Grant BJ; McCammon JA
Structure; 2008 Jun; 16(6):885-96. PubMed ID: 18547521
[TBL] [Abstract][Full Text] [Related]
10. Comparison of ras-p21 bound to GDP and GTP: differences in protein and ligand dynamics.
Mello LV; van Aalten DM; Findlay JB
Protein Eng; 1997 Apr; 10(4):381-7. PubMed ID: 9194162
[TBL] [Abstract][Full Text] [Related]
11. Kinetic analysis by fluorescence of the interaction between Ras and the catalytic domain of the guanine nucleotide exchange factor Cdc25Mm.
Lenzen C; Cool RH; Prinz H; Kuhlmann J; Wittinghofer A
Biochemistry; 1998 May; 37(20):7420-30. PubMed ID: 9585556
[TBL] [Abstract][Full Text] [Related]
12. Probing the conformational flexibility of monomeric FtsZ in GTP-bound, GDP-bound, and nucleotide-free states.
Natarajan K; Senapati S
Biochemistry; 2013 May; 52(20):3543-51. PubMed ID: 23617789
[TBL] [Abstract][Full Text] [Related]
13. Electrostatic control of GTP and GDP binding in the oncoprotein p21ras.
Muegge I; Schweins T; Langen R; Warshel A
Structure; 1996 Apr; 4(4):475-89. PubMed ID: 8740369
[TBL] [Abstract][Full Text] [Related]
14. Mechanism of free radical nitric oxide-mediated Ras guanine nucleotide dissociation.
Heo J; Prutzman KC; Mocanu V; Campbell SL
J Mol Biol; 2005 Mar; 346(5):1423-40. PubMed ID: 15713491
[TBL] [Abstract][Full Text] [Related]
15. Calculation of pathways for the conformational transition between the GTP- and GDP-bound states of the Ha-ras-p21 protein: calculations with explicit solvent simulations and comparison with calculations in vacuum.
Diaz JF; Wroblowski B; Schlitter J; Engelborghs Y
Proteins; 1997 Jul; 28(3):434-51. PubMed ID: 9223188
[TBL] [Abstract][Full Text] [Related]
16. High-frequency 94 GHz ENDOR characterization of the metal binding site in wild-type Ras x GDP and its oncogenic mutant G12V in frozen solution.
Bennati M; Hertel MM; Fritscher J; Prisner TF; Weiden N; Hofweber R; Spörner M; Horn G; Kalbitzer HR
Biochemistry; 2006 Jan; 45(1):42-50. PubMed ID: 16388579
[TBL] [Abstract][Full Text] [Related]
17. Common semiopen conformations of Mg2+-free Ras, Rho, Rab, Arf, and Ran proteins combined with GDP and their similarity with GEF-bound forms.
Mori K; Hata M; Neya S; Hoshino T
J Am Chem Soc; 2005 Nov; 127(43):15127-37. PubMed ID: 16248653
[TBL] [Abstract][Full Text] [Related]
18. A computational study of a recreated G protein-GEF reaction intermediate competent for nucleotide exchange: fate of the Mg ion.
Hamida-Rebaï MB; Robert CH
PLoS One; 2010 Feb; 5(2):e9142. PubMed ID: 20174625
[TBL] [Abstract][Full Text] [Related]
19. Conformational selection through electrostatics: Free energy simulations of GTP and GDP binding to archaeal initiation factor 2.
Satpati P; Simonson T
Proteins; 2012 May; 80(5):1264-82. PubMed ID: 22275120
[TBL] [Abstract][Full Text] [Related]
20. Superoxide anion radical modulates the activity of Ras and Ras-related GTPases by a radical-based mechanism similar to that of nitric oxide.
Heo J; Campbell SL
J Biol Chem; 2005 Apr; 280(13):12438-45. PubMed ID: 15684418
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
