104 related articles for article (PubMed ID: 25861770)
1. MetaMirClust: Discovery and Exploration of Evolutionarily Conserved miRNA Clusters.
Chan WC; Lin WC
Methods Mol Biol; 2016; 1375():75-89. PubMed ID: 25861770
[TBL] [Abstract][Full Text] [Related]
2. MetaMirClust: discovery of miRNA cluster patterns using a data-mining approach.
Chan WC; Ho MR; Li SC; Tsai KW; Lai CH; Hsu CN; Lin WC
Genomics; 2012 Sep; 100(3):141-8. PubMed ID: 22735742
[TBL] [Abstract][Full Text] [Related]
3. Identification of clustered microRNAs using an ab initio prediction method.
Sewer A; Paul N; Landgraf P; Aravin A; Pfeffer S; Brownstein MJ; Tuschl T; van Nimwegen E; Zavolan M
BMC Bioinformatics; 2005 Nov; 6():267. PubMed ID: 16274478
[TBL] [Abstract][Full Text] [Related]
4. Computational identification of Drosophila microRNA genes.
Lai EC; Tomancak P; Williams RW; Rubin GM
Genome Biol; 2003; 4(7):R42. PubMed ID: 12844358
[TBL] [Abstract][Full Text] [Related]
5. Comparative genomic analysis reveals evolutionary characteristics and patterns of microRNA clusters in vertebrates.
Sun J; Gao B; Zhou M; Wang ZZ; Zhang F; Deng JE; Li X
Gene; 2013 Jan; 512(2):383-91. PubMed ID: 23063939
[TBL] [Abstract][Full Text] [Related]
6. Origin, evolution, and biological role of miRNA cluster in DLK-DIO3 genomic region in placental mammals.
Glazov EA; McWilliam S; Barris WC; Dalrymple BP
Mol Biol Evol; 2008 May; 25(5):939-48. PubMed ID: 18281269
[TBL] [Abstract][Full Text] [Related]
7. Computational prediction of microRNA genes.
Hertel J; Langenberger D; Stadler PF
Methods Mol Biol; 2014; 1097():437-56. PubMed ID: 24639171
[TBL] [Abstract][Full Text] [Related]
8. Integrated evolutionary analysis of human miRNA gene clusters and families implicates evolutionary relationships.
Guo L; Zhao Y; Zhang H; Yang S; Chen F
Gene; 2014 Jan; 534(1):24-32. PubMed ID: 24161882
[TBL] [Abstract][Full Text] [Related]
9. miRNA Digger: a comprehensive pipeline for genome-wide novel miRNA mining.
Yu L; Shao C; Ye X; Meng Y; Zhou Y; Chen M
Sci Rep; 2016 Jan; 6():18901. PubMed ID: 26732371
[TBL] [Abstract][Full Text] [Related]
10. Genome-wide annotation of microRNA primary transcript structures reveals novel regulatory mechanisms.
Chang TC; Pertea M; Lee S; Salzberg SL; Mendell JT
Genome Res; 2015 Sep; 25(9):1401-9. PubMed ID: 26290535
[TBL] [Abstract][Full Text] [Related]
11. Diversity and evolution of MicroRNA gene clusters.
Zhang Y; Zhang R; Su B
Sci China C Life Sci; 2009 Mar; 52(3):261-6. PubMed ID: 19294351
[TBL] [Abstract][Full Text] [Related]
12. A survey on database resources for microRNA-disease relationships.
Wang Y; Cai Y
Brief Funct Genomics; 2017 May; 16(3):146-151. PubMed ID: 27155196
[TBL] [Abstract][Full Text] [Related]
13. Computational identification and evolutionary relationships of the microRNA gene cluster miR-71/2 in protostomes.
de Souza Gomes M; Donoghue MT; Muniyappa M; Pereira RV; Guerra-Sá R; Spillane C
J Mol Evol; 2013 Jun; 76(6):353-8. PubMed ID: 23740160
[TBL] [Abstract][Full Text] [Related]
14. Evolutionary conservation of microRNA regulatory circuits: an examination of microRNA gene complexity and conserved microRNA-target interactions through metazoan phylogeny.
Lee CT; Risom T; Strauss WM
DNA Cell Biol; 2007 Apr; 26(4):209-18. PubMed ID: 17465887
[TBL] [Abstract][Full Text] [Related]
15. Discovery of microRNA regulatory networks by integrating multidimensional high-throughput data.
Yang JH; Qu LH
Adv Exp Med Biol; 2013; 774():251-66. PubMed ID: 23377977
[TBL] [Abstract][Full Text] [Related]
16. The impact of age, biogenesis, and genomic clustering on Drosophila microRNA evolution.
Mohammed J; Flynt AS; Siepel A; Lai EC
RNA; 2013 Sep; 19(9):1295-308. PubMed ID: 23882112
[TBL] [Abstract][Full Text] [Related]
17. Computational identification of novel microRNA homologs in the chimpanzee genome.
Baev V; Daskalova E; Minkov I
Comput Biol Chem; 2009 Feb; 33(1):62-70. PubMed ID: 18760970
[TBL] [Abstract][Full Text] [Related]
18. Diverse modes of evolutionary emergence and flux of conserved microRNA clusters.
Mohammed J; Siepel A; Lai EC
RNA; 2014 Dec; 20(12):1850-63. PubMed ID: 25332374
[TBL] [Abstract][Full Text] [Related]
19. mirExplorer: detecting microRNAs from genome and next generation sequencing data using the AdaBoost method with transition probability matrix and combined features.
Guan DG; Liao JY; Qu ZH; Zhang Y; Qu LH
RNA Biol; 2011; 8(5):922-34. PubMed ID: 21881406
[TBL] [Abstract][Full Text] [Related]
20. Genomic analysis of silkworm microRNA promoters and clusters.
Huang Y; Shen XJ; Zou Q; Huang JS; Tang SM
Mol Biol (Mosk); 2011; 45(2):225-30. PubMed ID: 21630565
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]