490 related articles for article (PubMed ID: 25873244)
1. The CPTAC Data Portal: A Resource for Cancer Proteomics Research.
Edwards NJ; Oberti M; Thangudu RR; Cai S; McGarvey PB; Jacob S; Madhavan S; Ketchum KA
J Proteome Res; 2015 Jun; 14(6):2707-13. PubMed ID: 25873244
[TBL] [Abstract][Full Text] [Related]
2. LinkedOmics: analyzing multi-omics data within and across 32 cancer types.
Vasaikar SV; Straub P; Wang J; Zhang B
Nucleic Acids Res; 2018 Jan; 46(D1):D956-D963. PubMed ID: 29136207
[TBL] [Abstract][Full Text] [Related]
3. A Description of the Clinical Proteomic Tumor Analysis Consortium (CPTAC) Common Data Analysis Pipeline.
Rudnick PA; Markey SP; Roth J; Mirokhin Y; Yan X; Tchekhovskoi DV; Edwards NJ; Thangudu RR; Ketchum KA; Kinsinger CR; Mesri M; Rodriguez H; Stein SE
J Proteome Res; 2016 Mar; 15(3):1023-32. PubMed ID: 26860878
[TBL] [Abstract][Full Text] [Related]
4. Integration and Analysis of CPTAC Proteomics Data in the Context of Cancer Genomics in the cBioPortal.
Wu P; Heins ZJ; Muller JT; Katsnelson L; de Bruijn I; Abeshouse AA; Schultz N; Fenyö D; Gao J
Mol Cell Proteomics; 2019 Sep; 18(9):1893-1898. PubMed ID: 31308250
[TBL] [Abstract][Full Text] [Related]
5. TCGA-assembler 2: software pipeline for retrieval and processing of TCGA/CPTAC data.
Wei L; Jin Z; Yang S; Xu Y; Zhu Y; Ji Y
Bioinformatics; 2018 May; 34(9):1615-1617. PubMed ID: 29272348
[TBL] [Abstract][Full Text] [Related]
6. Linking cancer genome to proteome: NCI's investment into proteogenomics.
Rivers RC; Kinsinger C; Boja ES; Hiltke T; Mesri M; Rodriguez H
Proteomics; 2014 Dec; 14(23-24):2633-6. PubMed ID: 25187343
[TBL] [Abstract][Full Text] [Related]
7. Targeted proteomic assays for quantitation of proteins identified by proteogenomic analysis of ovarian cancer.
Song E; Gao Y; Wu C; Shi T; Nie S; Fillmore TL; Schepmoes AA; Gritsenko MA; Qian WJ; Smith RD; Rodland KD; Liu T
Sci Data; 2017 Jul; 4():170091. PubMed ID: 28722704
[TBL] [Abstract][Full Text] [Related]
8. Advanced Proteogenomic Analysis Reveals Multiple Peptide Mutations and Complex Immunoglobulin Peptides in Colon Cancer.
Woo S; Cha SW; Bonissone S; Na S; Tabb DL; Pevzner PA; Bafna V
J Proteome Res; 2015 Sep; 14(9):3555-67. PubMed ID: 26139413
[TBL] [Abstract][Full Text] [Related]
9. Using the CPTAC Assay Portal to Identify and Implement Highly Characterized Targeted Proteomics Assays.
Whiteaker JR; Halusa GN; Hoofnagle AN; Sharma V; MacLean B; Yan P; Wrobel JA; Kennedy J; Mani DR; Zimmerman LJ; Meyer MR; Mesri M; Boja E; Carr SA; Chan DW; Chen X; Chen J; Davies SR; Ellis MJ; Fenyö D; Hiltke T; Ketchum KA; Kinsinger C; Kuhn E; Liebler DC; Liu T; Loss M; MacCoss MJ; Qian WJ; Rivers R; Rodland KD; Ruggles KV; Scott MG; Smith RD; Thomas S; Townsend RR; Whiteley G; Wu C; Zhang H; Zhang Z; Rodriguez H; Paulovich AG
Methods Mol Biol; 2016; 1410():223-36. PubMed ID: 26867747
[TBL] [Abstract][Full Text] [Related]
10. A proteogenomics data-driven knowledge base of human cancer.
Liao Y; Savage SR; Dou Y; Shi Z; Yi X; Jiang W; Lei JT; Zhang B
Cell Syst; 2023 Sep; 14(9):777-787.e5. PubMed ID: 37619559
[TBL] [Abstract][Full Text] [Related]
11. Proteogenomic data and resources for pan-cancer analysis.
Li Y; Dou Y; Da Veiga Leprevost F; Geffen Y; Calinawan AP; Aguet F; Akiyama Y; Anand S; Birger C; Cao S; Chaudhary R; Chilappagari P; Cieslik M; Colaprico A; Zhou DC; Day C; Domagalski MJ; Esai Selvan M; Fenyö D; Foltz SM; Francis A; Gonzalez-Robles T; Gümüş ZH; Heiman D; Holck M; Hong R; Hu Y; Jaehnig EJ; Ji J; Jiang W; Katsnelson L; Ketchum KA; Klein RJ; Lei JT; Liang WW; Liao Y; Lindgren CM; Ma W; Ma L; MacCoss MJ; Martins Rodrigues F; McKerrow W; Nguyen N; Oldroyd R; Pilozzi A; Pugliese P; Reva B; Rudnick P; Ruggles KV; Rykunov D; Savage SR; Schnaubelt M; Schraink T; Shi Z; Singhal D; Song X; Storrs E; Terekhanova NV; Thangudu RR; Thiagarajan M; Wang LB; Wang JM; Wang Y; Wen B; Wu Y; Wyczalkowski MA; Xin Y; Yao L; Yi X; Zhang H; Zhang Q; Zuhl M; Getz G; Ding L; Nesvizhskii AI; Wang P; Robles AI; Zhang B; Payne SH;
Cancer Cell; 2023 Aug; 41(8):1397-1406. PubMed ID: 37582339
[TBL] [Abstract][Full Text] [Related]
12. Pan-cancer analysis of post-translational modifications reveals shared patterns of protein regulation.
Geffen Y; Anand S; Akiyama Y; Yaron TM; Song Y; Johnson JL; Govindan A; Babur Ö; Li Y; Huntsman E; Wang LB; Birger C; Heiman DI; Zhang Q; Miller M; Maruvka YE; Haradhvala NJ; Calinawan A; Belkin S; Kerelsky A; Clauser KR; Krug K; Satpathy S; Payne SH; Mani DR; Gillette MA; Dhanasekaran SM; Thiagarajan M; Mesri M; Rodriguez H; Robles AI; Carr SA; Lazar AJ; Aguet F; Cantley LC; Ding L; Getz G;
Cell; 2023 Aug; 186(18):3945-3967.e26. PubMed ID: 37582358
[TBL] [Abstract][Full Text] [Related]
13. Identification of missing proteins in the neXtProt database and unregistered phosphopeptides in the PhosphoSitePlus database as part of the Chromosome-centric Human Proteome Project.
Shiromizu T; Adachi J; Watanabe S; Murakami T; Kuga T; Muraoka S; Tomonaga T
J Proteome Res; 2013 Jun; 12(6):2414-21. PubMed ID: 23312004
[TBL] [Abstract][Full Text] [Related]
14. Reproducibility of Differential Proteomic Technologies in CPTAC Fractionated Xenografts.
Tabb DL; Wang X; Carr SA; Clauser KR; Mertins P; Chambers MC; Holman JD; Wang J; Zhang B; Zimmerman LJ; Chen X; Gunawardena HP; Davies SR; Ellis MJ; Li S; Townsend RR; Boja ES; Ketchum KA; Kinsinger CR; Mesri M; Rodriguez H; Liu T; Kim S; McDermott JE; Payne SH; Petyuk VA; Rodland KD; Smith RD; Yang F; Chan DW; Zhang B; Zhang H; Zhang Z; Zhou JY; Liebler DC
J Proteome Res; 2016 Mar; 15(3):691-706. PubMed ID: 26653538
[TBL] [Abstract][Full Text] [Related]
15. Simplified and Unified Access to Cancer Proteogenomic Data.
Lindgren CM; Adams DW; Kimball B; Boekweg H; Tayler S; Pugh SL; Payne SH
J Proteome Res; 2021 Apr; 20(4):1902-1910. PubMed ID: 33560848
[TBL] [Abstract][Full Text] [Related]
16. UALCAN: An update to the integrated cancer data analysis platform.
Chandrashekar DS; Karthikeyan SK; Korla PK; Patel H; Shovon AR; Athar M; Netto GJ; Qin ZS; Kumar S; Manne U; Creighton CJ; Varambally S
Neoplasia; 2022 Mar; 25():18-27. PubMed ID: 35078134
[TBL] [Abstract][Full Text] [Related]
17. Cancer proteome-expression database: Genome Medicine Database of Japan Proteomics.
Kondo T
Expert Rev Proteomics; 2010 Feb; 7(1):21-7. PubMed ID: 20121473
[TBL] [Abstract][Full Text] [Related]
18. Proteogenomics Dashboard for the Human Proteome Project.
Tabas-Madrid D; Alves-Cruzeiro J; Segura V; Guruceaga E; Vialas V; Prieto G; García C; Corrales FJ; Albar JP; Pascual-Montano A
J Proteome Res; 2015 Sep; 14(9):3738-49. PubMed ID: 26144527
[TBL] [Abstract][Full Text] [Related]
19. A User-Friendly Visualization Tool for Multi-Omics Data.
Huh S; Kim MS
Proteomics; 2020 Nov; 20(21-22):e2000136. PubMed ID: 32744797
[TBL] [Abstract][Full Text] [Related]
20. Human protein reference database as a discovery resource for proteomics.
Peri S; Navarro JD; Kristiansen TZ; Amanchy R; Surendranath V; Muthusamy B; Gandhi TK; Chandrika KN; Deshpande N; Suresh S; Rashmi BP; Shanker K; Padma N; Niranjan V; Harsha HC; Talreja N; Vrushabendra BM; Ramya MA; Yatish AJ; Joy M; Shivashankar HN; Kavitha MP; Menezes M; Choudhury DR; Ghosh N; Saravana R; Chandran S; Mohan S; Jonnalagadda CK; Prasad CK; Kumar-Sinha C; Deshpande KS; Pandey A
Nucleic Acids Res; 2004 Jan; 32(Database issue):D497-501. PubMed ID: 14681466
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]