283 related articles for article (PubMed ID: 25873435)
1. Estimating phylogenetic trees from genome-scale data.
Liu L; Xi Z; Wu S; Davis CC; Edwards SV
Ann N Y Acad Sci; 2015 Dec; 1360():36-53. PubMed ID: 25873435
[TBL] [Abstract][Full Text] [Related]
2. Estimating species phylogeny from gene-tree probabilities despite incomplete lineage sorting: an example from Melanoplus grasshoppers.
Carstens BC; Knowles LL
Syst Biol; 2007 Jun; 56(3):400-11. PubMed ID: 17520504
[TBL] [Abstract][Full Text] [Related]
3. The gene tree delusion.
Springer MS; Gatesy J
Mol Phylogenet Evol; 2016 Jan; 94(Pt A):1-33. PubMed ID: 26238460
[TBL] [Abstract][Full Text] [Related]
4. To Include or Not to Include: The Impact of Gene Filtering on Species Tree Estimation Methods.
Molloy EK; Warnow T
Syst Biol; 2018 Mar; 67(2):285-303. PubMed ID: 29029338
[TBL] [Abstract][Full Text] [Related]
5. Coalescent-Based Analyses of Genomic Sequence Data Provide a Robust Resolution of Phylogenetic Relationships among Major Groups of Gibbons.
Shi CM; Yang Z
Mol Biol Evol; 2018 Jan; 35(1):159-179. PubMed ID: 29087487
[TBL] [Abstract][Full Text] [Related]
6. Signal, Uncertainty, and Conflict in Phylogenomic Data for a Diverse Lineage of Microbial Eukaryotes (Diatoms, Bacillariophyta).
Parks MB; Wickett NJ; Alverson AJ
Mol Biol Evol; 2018 Jan; 35(1):80-93. PubMed ID: 29040712
[TBL] [Abstract][Full Text] [Related]
7. Modern Phylogenomics: Building Phylogenetic Trees Using the Multispecies Coalescent Model.
Liu L; Anderson C; Pearl D; Edwards SV
Methods Mol Biol; 2019; 1910():211-239. PubMed ID: 31278666
[TBL] [Abstract][Full Text] [Related]
8. What is the danger of the anomaly zone for empirical phylogenetics?
Huang H; Knowles LL
Syst Biol; 2009 Oct; 58(5):527-36. PubMed ID: 20525606
[TBL] [Abstract][Full Text] [Related]
9. Coalescent methods for estimating phylogenetic trees.
Liu L; Yu L; Kubatko L; Pearl DK; Edwards SV
Mol Phylogenet Evol; 2009 Oct; 53(1):320-8. PubMed ID: 19501178
[TBL] [Abstract][Full Text] [Related]
10. Sources of error inherent in species-tree estimation: impact of mutational and coalescent effects on accuracy and implications for choosing among different methods.
Huang H; He Q; Kubatko LS; Knowles LL
Syst Biol; 2010 Oct; 59(5):573-83. PubMed ID: 20833951
[TBL] [Abstract][Full Text] [Related]
11. Whole-Genome Analyses Resolve the Phylogeny of Flightless Birds (Palaeognathae) in the Presence of an Empirical Anomaly Zone.
Cloutier A; Sackton TB; Grayson P; Clamp M; Baker AJ; Edwards SV
Syst Biol; 2019 Nov; 68(6):937-955. PubMed ID: 31135914
[TBL] [Abstract][Full Text] [Related]
12. Coalescent methods are robust to the simultaneous effects of long branches and incomplete lineage sorting.
Liu L; Xi Z; Davis CC
Mol Biol Evol; 2015 Mar; 32(3):791-805. PubMed ID: 25431481
[TBL] [Abstract][Full Text] [Related]
13. Multilocus phylogenetics of a rapid radiation in the genus Thomomys (Rodentia: Geomyidae).
Belfiore NM; Liu L; Moritz C
Syst Biol; 2008 Apr; 57(2):294-310. PubMed ID: 18432550
[TBL] [Abstract][Full Text] [Related]
14. Detecting the Anomaly Zone in Species Trees and Evidence for a Misleading Signal in Higher-Level Skink Phylogeny (Squamata: Scincidae).
Linkem CW; Minin VN; Leaché AD
Syst Biol; 2016 May; 65(3):465-77. PubMed ID: 26738927
[TBL] [Abstract][Full Text] [Related]
15. Phylogenomic interrogation of arachnida reveals systemic conflicts in phylogenetic signal.
Sharma PP; Kaluziak ST; Pérez-Porro AR; González VL; Hormiga G; Wheeler WC; Giribet G
Mol Biol Evol; 2014 Nov; 31(11):2963-84. PubMed ID: 25107551
[TBL] [Abstract][Full Text] [Related]
16. Challenges in Species Tree Estimation Under the Multispecies Coalescent Model.
Xu B; Yang Z
Genetics; 2016 Dec; 204(4):1353-1368. PubMed ID: 27927902
[TBL] [Abstract][Full Text] [Related]
17. On the Robustness to Gene Tree Estimation Error (or lack thereof) of Coalescent-Based Species Tree Methods.
Roch S; Warnow T
Syst Biol; 2015 Jul; 64(4):663-76. PubMed ID: 25813358
[TBL] [Abstract][Full Text] [Related]
18. Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions.
Liu L; Pearl DK
Syst Biol; 2007 Jun; 56(3):504-14. PubMed ID: 17562474
[TBL] [Abstract][Full Text] [Related]
19. Is a new and general theory of molecular systematics emerging?
Edwards SV
Evolution; 2009 Jan; 63(1):1-19. PubMed ID: 19146594
[TBL] [Abstract][Full Text] [Related]
20. The Challenges of Resolving a Rapid, Recent Radiation: Empirical and Simulated Phylogenomics of Philippine Shrews.
Giarla TC; Esselstyn JA
Syst Biol; 2015 Sep; 64(5):727-40. PubMed ID: 25979143
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]