557 related articles for article (PubMed ID: 25879418)
1. The central nervous system transcriptome of the weakly electric brown ghost knifefish (Apteronotus leptorhynchus): de novo assembly, annotation, and proteomics validation.
Salisbury JP; Sîrbulescu RF; Moran BM; Auclair JR; Zupanc GK; Agar JN
BMC Genomics; 2015 Mar; 16(1):166. PubMed ID: 25879418
[TBL] [Abstract][Full Text] [Related]
2. Challenges and advances for transcriptome assembly in non-model species.
Ungaro A; Pech N; Martin JF; McCairns RJS; Mévy JP; Chappaz R; Gilles A
PLoS One; 2017; 12(9):e0185020. PubMed ID: 28931057
[TBL] [Abstract][Full Text] [Related]
3. Comparative performance of transcriptome assembly methods for non-model organisms.
Huang X; Chen XG; Armbruster PA
BMC Genomics; 2016 Jul; 17():523. PubMed ID: 27464550
[TBL] [Abstract][Full Text] [Related]
4. Proteomic characterization of spontaneously regrowing spinal cord following injury in the teleost fish Apteronotus leptorhynchus, a regeneration-competent vertebrate.
Sîrbulescu RF; Ilieş I; Amelung L; Zupanc GKH
J Comp Physiol A Neuroethol Sens Neural Behav Physiol; 2022 Nov; 208(5-6):671-706. PubMed ID: 36445471
[TBL] [Abstract][Full Text] [Related]
5. 454 pyrosequencing-based analysis of gene expression profiles in the amphipod Melita plumulosa: transcriptome assembly and toxicant induced changes.
Hook SE; Twine NA; Simpson SL; Spadaro DA; Moncuquet P; Wilkins MR
Aquat Toxicol; 2014 Aug; 153():73-88. PubMed ID: 24434169
[TBL] [Abstract][Full Text] [Related]
6. Characterization of 954 bovine full-CDS cDNA sequences.
Harhay GP; Sonstegard TS; Keele JW; Heaton MP; Clawson ML; Snelling WM; Wiedmann RT; Van Tassell CP; Smith TP
BMC Genomics; 2005 Nov; 6():166. PubMed ID: 16305752
[TBL] [Abstract][Full Text] [Related]
7. Transcriptome assembly, gene annotation and tissue gene expression atlas of the rainbow trout.
Salem M; Paneru B; Al-Tobasei R; Abdouni F; Thorgaard GH; Rexroad CE; Yao J
PLoS One; 2015; 10(3):e0121778. PubMed ID: 25793877
[TBL] [Abstract][Full Text] [Related]
8. De Novo Plant Transcriptome Assembly and Annotation Using Illumina RNA-Seq Reads.
Kerr SC; Gaiti F; Tanurdzic M
Methods Mol Biol; 2019; 1933():265-275. PubMed ID: 30945191
[TBL] [Abstract][Full Text] [Related]
9. RNA-Seq analysis and transcriptome assembly for blackberry (Rubus sp. Var. Lochness) fruit.
Garcia-Seco D; Zhang Y; Gutierrez-Mañero FJ; Martin C; Ramos-Solano B
BMC Genomics; 2015 Jan; 16(1):5. PubMed ID: 25608670
[TBL] [Abstract][Full Text] [Related]
10. FRAMA: from RNA-seq data to annotated mRNA assemblies.
Bens M; Sahm A; Groth M; Jahn N; Morhart M; Holtze S; Hildebrandt TB; Platzer M; Szafranski K
BMC Genomics; 2016 Jan; 17():54. PubMed ID: 26763976
[TBL] [Abstract][Full Text] [Related]
11. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote.
Liu S; Zhang Y; Zhou Z; Waldbieser G; Sun F; Lu J; Zhang J; Jiang Y; Zhang H; Wang X; Rajendran KV; Khoo L; Kucuktas H; Peatman E; Liu Z
BMC Genomics; 2012 Nov; 13():595. PubMed ID: 23127152
[TBL] [Abstract][Full Text] [Related]
12. A de novo assembly of the newt transcriptome combined with proteomic validation identifies new protein families expressed during tissue regeneration.
Looso M; Preussner J; Sousounis K; Bruckskotten M; Michel CS; Lignelli E; Reinhardt R; Höffner S; Krüger M; Tsonis PA; Borchardt T; Braun T
Genome Biol; 2013 Feb; 14(2):R16. PubMed ID: 23425577
[TBL] [Abstract][Full Text] [Related]
13. [Analysis, identification and correction of some errors of model refseqs appeared in NCBI Human Gene Database by in silico cloning and experimental verification of novel human genes].
Zhang DL; Ji L; Li YD
Yi Chuan Xue Bao; 2004 May; 31(5):431-43. PubMed ID: 15478601
[TBL] [Abstract][Full Text] [Related]
14. An American mink (Neovison vison) transcriptome.
Christensen K; Anistoroaei R
Anim Genet; 2014 Apr; 45(2):301-3. PubMed ID: 24444022
[TBL] [Abstract][Full Text] [Related]
15. Semantic Assembly and Annotation of Draft RNAseq Transcripts without a Reference Genome.
Ptitsyn A; Temanni R; Bouchard C; Anderson PA
PLoS One; 2015; 10(9):e0138006. PubMed ID: 26393794
[TBL] [Abstract][Full Text] [Related]
16. De novo assembly of expressed transcripts and global analysis of the Phalaenopsis aphrodite transcriptome.
Su CL; Chao YT; Alex Chang YC; Chen WC; Chen CY; Lee AY; Hwa KT; Shih MC
Plant Cell Physiol; 2011 Sep; 52(9):1501-14. PubMed ID: 21771864
[TBL] [Abstract][Full Text] [Related]
17. Identification of Putative Nuclear Receptors and Steroidogenic Enzymes in Murray-Darling Rainbowfish (Melanotaenia fluviatilis) Using RNA-Seq and De Novo Transcriptome Assembly.
Bain PA; Papanicolaou A; Kumar A
PLoS One; 2015; 10(11):e0142636. PubMed ID: 26599404
[TBL] [Abstract][Full Text] [Related]
18. Assembly and annotation of a non-model gastropod (Nerita melanotragus) transcriptome: a comparison of de novo assemblers.
Amin S; Prentis PJ; Gilding EK; Pavasovic A
BMC Res Notes; 2014 Aug; 7():488. PubMed ID: 25084827
[TBL] [Abstract][Full Text] [Related]
19. Optimizing Hybrid de Novo Transcriptome Assembly and Extending Genomic Resources for Giant Freshwater Prawns (Macrobrachium rosenbergii): The Identification of Genes and Markers Associated with Reproduction.
Jung H; Yoon BH; Kim WJ; Kim DW; Hurwood DA; Lyons RE; Salin KR; Kim HS; Baek I; Chand V; Mather PB
Int J Mol Sci; 2016 May; 17(5):. PubMed ID: 27164098
[TBL] [Abstract][Full Text] [Related]
20. Integration of Ixodes ricinus genome sequencing with transcriptome and proteome annotation of the naïve midgut.
Cramaro WJ; Revets D; Hunewald OE; Sinner R; Reye AL; Muller CP
BMC Genomics; 2015 Oct; 16():871. PubMed ID: 26510422
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
