These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

225 related articles for article (PubMed ID: 25881276)

  • 1. VisualTE: a graphical interface for transposable element analysis at the genomic scale.
    Tempel S; Talla E
    BMC Genomics; 2015 Feb; 16(1):139. PubMed ID: 25881276
    [TBL] [Abstract][Full Text] [Related]  

  • 2. VisualRepbase: an interface for the study of occurrences of transposable element families.
    Tempel S; Jurka M; Jurka J
    BMC Bioinformatics; 2008 Aug; 9():345. PubMed ID: 18710569
    [TBL] [Abstract][Full Text] [Related]  

  • 3. TEnest 2.0: computational annotation and visualization of nested transposable elements.
    Kronmiller BA; Wise RP
    Methods Mol Biol; 2013; 1057():305-19. PubMed ID: 23918438
    [TBL] [Abstract][Full Text] [Related]  

  • 4. GREAM: A Web Server to Short-List Potentially Important Genomic Repeat Elements Based on Over-/Under-Representation in Specific Chromosomal Locations, Such as the Gene Neighborhoods, within or across 17 Mammalian Species.
    Chandrashekar DS; Dey P; Acharya KK
    PLoS One; 2015; 10(7):e0133647. PubMed ID: 26208093
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Visual ModuleOrganizer: a graphical interface for the detection and comparative analysis of repeat DNA modules.
    Tempel S; Talla E
    Mob DNA; 2014; 5():9. PubMed ID: 24678954
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Tedna: a transposable element de novo assembler.
    Zytnicki M; Akhunov E; Quesneville H
    Bioinformatics; 2014 Sep; 30(18):2656-8. PubMed ID: 24894500
    [TBL] [Abstract][Full Text] [Related]  

  • 7. DPTEdb, an integrative database of transposable elements in dioecious plants.
    Li SF; Zhang GJ; Zhang XJ; Yuan JH; Deng CL; Gu LF; Gao WJ
    Database (Oxford); 2016; 2016():. PubMed ID: 27173524
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Inferring transposons activity chronology by TRANScendence - TEs database and de-novo mining tool.
    Startek MP; Nogły J; Gromadka A; Grzebelus D; Gambin A
    BMC Bioinformatics; 2017 Oct; 18(Suppl 12):422. PubMed ID: 29072141
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Domain organization within repeated DNA sequences: application to the study of a family of transposable elements.
    Tempel S; Giraud M; Lavenier D; Lerman IC; Valin AS; Couée I; Amrani AE; Nicolas J
    Bioinformatics; 2006 Aug; 22(16):1948-54. PubMed ID: 16809391
    [TBL] [Abstract][Full Text] [Related]  

  • 10. TnCentral: a Prokaryotic Transposable Element Database and Web Portal for Transposon Analysis.
    Ross K; Varani AM; Snesrud E; Huang H; Alvarenga DO; Zhang J; Wu C; McGann P; Chandler M
    mBio; 2021 Oct; 12(5):e0206021. PubMed ID: 34517763
    [TBL] [Abstract][Full Text] [Related]  

  • 11. BLAT-based comparative analysis for transposable elements: BLATCAT.
    Lee S; Oh S; Kang K; Han K
    Biomed Res Int; 2014; 2014():730814. PubMed ID: 24959585
    [TBL] [Abstract][Full Text] [Related]  

  • 12. PlanTE-MIR DB: a database for transposable element-related microRNAs in plant genomes.
    R Lorenzetti AP; A de Antonio GY; Paschoal AR; Domingues DS
    Funct Integr Genomics; 2016 May; 16(3):235-42. PubMed ID: 26887375
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Miniature inverted-repeat transposable elements: discovery, distribution, and activity.
    Fattash I; Rooke R; Wong A; Hui C; Luu T; Bhardwaj P; Yang G
    Genome; 2013 Sep; 56(9):475-86. PubMed ID: 24168668
    [TBL] [Abstract][Full Text] [Related]  

  • 14. MnTEdb, a collective resource for mulberry transposable elements.
    Ma B; Li T; Xiang Z; He N
    Database (Oxford); 2015; 2015():. PubMed ID: 25725060
    [TBL] [Abstract][Full Text] [Related]  

  • 15. ISQuest: finding insertion sequences in prokaryotic sequence fragment data.
    Biswas A; Gauthier DT; Ranjan D; Zubair M
    Bioinformatics; 2015 Nov; 31(21):3406-12. PubMed ID: 26116929
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Transposome: a toolkit for annotation of transposable element families from unassembled sequence reads.
    Staton SE; Burke JM
    Bioinformatics; 2015 Jun; 31(11):1827-9. PubMed ID: 25644271
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Role of transposable elements in heterochromatin and epigenetic control.
    Lippman Z; Gendrel AV; Black M; Vaughn MW; Dedhia N; McCombie WR; Lavine K; Mittal V; May B; Kasschau KD; Carrington JC; Doerge RW; Colot V; Martienssen R
    Nature; 2004 Jul; 430(6998):471-6. PubMed ID: 15269773
    [TBL] [Abstract][Full Text] [Related]  

  • 18. GeneViTo: visualizing gene-product functional and structural features in genomic datasets.
    Vernikos GS; Gkogkas CG; Promponas VJ; Hamodrakas SJ
    BMC Bioinformatics; 2003 Oct; 4():53. PubMed ID: 14594459
    [TBL] [Abstract][Full Text] [Related]  

  • 19. RNA-seq-Based Gene Annotation and Comparative Genomics of Four Fungal Grass Pathogens in the Genus Zymoseptoria Identify Novel Orphan Genes and Species-Specific Invasions of Transposable Elements.
    Grandaubert J; Bhattacharyya A; Stukenbrock EH
    G3 (Bethesda); 2015 Apr; 5(7):1323-33. PubMed ID: 25917918
    [TBL] [Abstract][Full Text] [Related]  

  • 20. ModuleOrganizer: detecting modules in families of transposable elements.
    Tempel S; Rousseau C; Tahi F; Nicolas J
    BMC Bioinformatics; 2010 Sep; 11():474. PubMed ID: 20860790
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.