91 related articles for article (PubMed ID: 25882834)
1. Whole-proteome based phylogenetic tree construction with inter-amino-acid distances and the conditional geometric distribution profiles.
Xie XH; Yu ZG; Han GS; Yang WF; Anh V
Mol Phylogenet Evol; 2015 Aug; 89():37-45. PubMed ID: 25882834
[TBL] [Abstract][Full Text] [Related]
2. Whole genome/proteome based phylogeny reconstruction for prokaryotes using higher order Markov model and chaos game representation.
Yang WF; Yu ZG; Anh V
Mol Phylogenet Evol; 2016 Mar; 96():102-111. PubMed ID: 26724405
[TBL] [Abstract][Full Text] [Related]
3. Detecting phylogenetic signals in eukaryotic whole genome sequences.
Cohen E; Chor B
J Comput Biol; 2012 Aug; 19(8):945-56. PubMed ID: 22876786
[TBL] [Abstract][Full Text] [Related]
4. An alignment-free method to find similarity among protein sequences via the general form of Chou's pseudo amino acid composition.
Gupta MK; Niyogi R; Misra M
SAR QSAR Environ Res; 2013; 24(7):597-609. PubMed ID: 23710804
[TBL] [Abstract][Full Text] [Related]
5. Prot-SpaM: fast alignment-free phylogeny reconstruction based on whole-proteome sequences.
Leimeister CA; Schellhorn J; Dörrer S; Gerth M; Bleidorn C; Morgenstern B
Gigascience; 2019 Mar; 8(3):. PubMed ID: 30535314
[TBL] [Abstract][Full Text] [Related]
6. Alignment-free comparison of genome sequences by a new numerical characterization.
Huang G; Zhou H; Li Y; Xu L
J Theor Biol; 2011 Jul; 281(1):107-12. PubMed ID: 21536050
[TBL] [Abstract][Full Text] [Related]
7. Relationship between whole proteome aminoacid composition and static DNA curvature.
Jáuregui R; Bolivar F; Merino E
Microb Comp Genomics; 2000; 5(1):7-15. PubMed ID: 11011761
[TBL] [Abstract][Full Text] [Related]
8. Protein map: an alignment-free sequence comparison method based on various properties of amino acids.
Yu C; Cheng SY; He RL; Yau SS
Gene; 2011 Oct; 486(1-2):110-8. PubMed ID: 21803133
[TBL] [Abstract][Full Text] [Related]
9. PHOG: a database of supergenomes built from proteome complements.
Merkeev IV; Novichkov PS; Mironov AA
BMC Evol Biol; 2006 Jun; 6():52. PubMed ID: 16792803
[TBL] [Abstract][Full Text] [Related]
10. Construction of phylogenetic profiles based on the genetic distance of hundreds of genomes.
Sun J; Zhao Z
Biochem Biophys Res Commun; 2007 Apr; 355(3):849-53. PubMed ID: 17320815
[TBL] [Abstract][Full Text] [Related]
11. The average common substring approach to phylogenomic reconstruction.
Ulitsky I; Burstein D; Tuller T; Chor B
J Comput Biol; 2006 Mar; 13(2):336-50. PubMed ID: 16597244
[TBL] [Abstract][Full Text] [Related]
12. Genome analysis with the conditional multinomial distribution profile.
Chang G; Wang T
J Theor Biol; 2011 Feb; 271(1):44-50. PubMed ID: 21129383
[TBL] [Abstract][Full Text] [Related]
13. Virus classification in 60-dimensional protein space.
Li Y; Tian K; Yin C; He RL; Yau SS
Mol Phylogenet Evol; 2016 Jun; 99():53-62. PubMed ID: 26988414
[TBL] [Abstract][Full Text] [Related]
14. Whole-proteome phylogeny of prokaryotes by feature frequency profiles: An alignment-free method with optimal feature resolution.
Jun SR; Sims GE; Wu GA; Kim SH
Proc Natl Acad Sci U S A; 2010 Jan; 107(1):133-8. PubMed ID: 20018669
[TBL] [Abstract][Full Text] [Related]
15. Sequence-specific reconstruction from fragmentary databases using seed sequences: implementation and validation on SAGE, proteome and generic sequencing data.
Sobreira TJ; Gruber A
Bioinformatics; 2008 Aug; 24(15):1676-80. PubMed ID: 18544546
[TBL] [Abstract][Full Text] [Related]
16. A new distribution vector and its application in genome clustering.
Zhao B; He RL; Yau SS
Mol Phylogenet Evol; 2011 May; 59(2):438-43. PubMed ID: 21385621
[TBL] [Abstract][Full Text] [Related]
17. Phylogenetic analysis of DNA sequences based on the generalized pseudo-amino acid composition.
Huang Y; Yang L; Wang T
J Theor Biol; 2011 Jan; 269(1):217-23. PubMed ID: 21040733
[TBL] [Abstract][Full Text] [Related]
18. Whole-proteome phylogeny of large dsDNA viruses and parvoviruses through a composition vector method related to dynamical language model.
Yu ZG; Chu KH; Li CP; Anh V; Zhou LQ; Wang RW
BMC Evol Biol; 2010 Jun; 10():192. PubMed ID: 20565983
[TBL] [Abstract][Full Text] [Related]
19. Evolution of proteomes: fundamental signatures and global trends in amino acid compositions.
Tekaia F; Yeramian E
BMC Genomics; 2006 Dec; 7():307. PubMed ID: 17147802
[TBL] [Abstract][Full Text] [Related]
20. Gene comparison based on the repetition of single-nucleotide structure patterns.
Qi ZH; Du MH; Qi XQ; Zheng LJ
Comput Biol Med; 2012 Oct; 42(10):975-81. PubMed ID: 22902300
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
