719 related articles for article (PubMed ID: 25884927)
1. Fully automated pipeline for detection of sex linked genes using RNA-Seq data.
Michalovova M; Kubat Z; Hobza R; Vyskot B; Kejnovsky E
BMC Bioinformatics; 2015 Mar; 16(1):78. PubMed ID: 25884927
[TBL] [Abstract][Full Text] [Related]
2. QuickRNASeq lifts large-scale RNA-seq data analyses to the next level of automation and interactive visualization.
Zhao S; Xi L; Quan J; Xi H; Zhang Y; von Schack D; Vincent M; Zhang B
BMC Genomics; 2016 Jan; 17():39. PubMed ID: 26747388
[TBL] [Abstract][Full Text] [Related]
3. mInDel: a high-throughput and efficient pipeline for genome-wide InDel marker development.
Lv Y; Liu Y; Zhao H
BMC Genomics; 2016 Apr; 17():290. PubMed ID: 27079510
[TBL] [Abstract][Full Text] [Related]
4. SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis.
Johnson BK; Scholz MB; Teal TK; Abramovitch RB
BMC Bioinformatics; 2016 Feb; 17():66. PubMed ID: 26847232
[TBL] [Abstract][Full Text] [Related]
5. CANEapp: a user-friendly application for automated next generation transcriptomic data analysis.
Velmeshev D; Lally P; Magistri M; Faghihi MA
BMC Genomics; 2016 Jan; 17():49. PubMed ID: 26758513
[TBL] [Abstract][Full Text] [Related]
6. SimBA: A methodology and tools for evaluating the performance of RNA-Seq bioinformatic pipelines.
Audoux J; Salson M; Grosset CF; Beaumeunier S; Holder JM; Commes T; Philippe N
BMC Bioinformatics; 2017 Sep; 18(1):428. PubMed ID: 28969586
[TBL] [Abstract][Full Text] [Related]
7. Grape RNA-Seq analysis pipeline environment.
Knowles DG; Röder M; Merkel A; Guigó R
Bioinformatics; 2013 Mar; 29(5):614-21. PubMed ID: 23329413
[TBL] [Abstract][Full Text] [Related]
8. SEXCMD: Development and validation of sex marker sequences for whole-exome/genome and RNA sequencing.
Jeong S; Kim J; Park W; Jeon H; Kim N
PLoS One; 2017; 12(9):e0184087. PubMed ID: 28886064
[TBL] [Abstract][Full Text] [Related]
9. TRAPLINE: a standardized and automated pipeline for RNA sequencing data analysis, evaluation and annotation.
Wolfien M; Rimmbach C; Schmitz U; Jung JJ; Krebs S; Steinhoff G; David R; Wolkenhauer O
BMC Bioinformatics; 2016 Jan; 17():21. PubMed ID: 26738481
[TBL] [Abstract][Full Text] [Related]
10. UNDR ROVER - a fast and accurate variant caller for targeted DNA sequencing.
Park DJ; Li R; Lau E; Georgeson P; Nguyen-Dumont T; Pope BJ
BMC Bioinformatics; 2016 Apr; 17():165. PubMed ID: 27083325
[TBL] [Abstract][Full Text] [Related]
11. UTAP: User-friendly Transcriptome Analysis Pipeline.
Kohen R; Barlev J; Hornung G; Stelzer G; Feldmesser E; Kogan K; Safran M; Leshkowitz D
BMC Bioinformatics; 2019 Mar; 20(1):154. PubMed ID: 30909881
[TBL] [Abstract][Full Text] [Related]
12. MSRE-HTPrimer: a high-throughput and genome-wide primer design pipeline optimized for epigenetic research.
Pandey RV; Pulverer W; Kallmeyer R; Beikircher G; Pabinger S; Kriegner A; Weinhäusel A
Clin Epigenetics; 2016; 8():26. PubMed ID: 26949424
[TBL] [Abstract][Full Text] [Related]
13. iMir: an integrated pipeline for high-throughput analysis of small non-coding RNA data obtained by smallRNA-Seq.
Giurato G; De Filippo MR; Rinaldi A; Hashim A; Nassa G; Ravo M; Rizzo F; Tarallo R; Weisz A
BMC Bioinformatics; 2013 Dec; 14():362. PubMed ID: 24330401
[TBL] [Abstract][Full Text] [Related]
14. AUSPP: A universal short-read pre-processing package.
Gao L; Wu C; Liu L
J Bioinform Comput Biol; 2019 Dec; 17(6):1950037. PubMed ID: 32019418
[TBL] [Abstract][Full Text] [Related]
15. RAP: RNA-Seq Analysis Pipeline, a new cloud-based NGS web application.
D'Antonio M; D'Onorio De Meo P; Pallocca M; Picardi E; D'Erchia AM; Calogero RA; Castrignanò T; Pesole G
BMC Genomics; 2015; 16(Suppl 6):S3. PubMed ID: 26046471
[TBL] [Abstract][Full Text] [Related]
16. SAMSA2: a standalone metatranscriptome analysis pipeline.
Westreich ST; Treiber ML; Mills DA; Korf I; Lemay DG
BMC Bioinformatics; 2018 May; 19(1):175. PubMed ID: 29783945
[TBL] [Abstract][Full Text] [Related]
17. SeqAssist: a novel toolkit for preliminary analysis of next-generation sequencing data.
Peng Y; Maxwell AS; Barker ND; Laird JG; Kennedy AJ; Wang N; Zhang C; Gong P
BMC Bioinformatics; 2014; 15 Suppl 11(Suppl 11):S10. PubMed ID: 25349885
[TBL] [Abstract][Full Text] [Related]
18. hppRNA-a Snakemake-based handy parameter-free pipeline for RNA-Seq analysis of numerous samples.
Wang D
Brief Bioinform; 2018 Jul; 19(4):622-626. PubMed ID: 28096075
[TBL] [Abstract][Full Text] [Related]
19. dupRadar: a Bioconductor package for the assessment of PCR artifacts in RNA-Seq data.
Sayols S; Scherzinger D; Klein H
BMC Bioinformatics; 2016 Oct; 17(1):428. PubMed ID: 27769170
[TBL] [Abstract][Full Text] [Related]
20. ExUTR: a novel pipeline for large-scale prediction of 3'-UTR sequences from NGS data.
Huang Z; Teeling EC
BMC Genomics; 2017 Nov; 18(1):847. PubMed ID: 29110697
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
