These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

186 related articles for article (PubMed ID: 25885901)

  • 21. Optimal algorithms for haplotype assembly from whole-genome sequence data.
    He D; Choi A; Pipatsrisawat K; Darwiche A; Eskin E
    Bioinformatics; 2010 Jun; 26(12):i183-90. PubMed ID: 20529904
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Tumor haplotype assembly algorithms for cancer genomics.
    Aguiar D; Wong WS; Istrail S
    Pac Symp Biocomput; 2014; ():3-14. PubMed ID: 24297529
    [TBL] [Abstract][Full Text] [Related]  

  • 23. TriPoly: haplotype estimation for polyploids using sequencing data of related individuals.
    Motazedi E; de Ridder D; Finkers R; Baldwin S; Thomson S; Monaghan K; Maliepaard C
    Bioinformatics; 2018 Nov; 34(22):3864-3872. PubMed ID: 29868858
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Computational methods for chromosome-scale haplotype reconstruction.
    Garg S
    Genome Biol; 2021 Apr; 22(1):101. PubMed ID: 33845884
    [TBL] [Abstract][Full Text] [Related]  

  • 25. HaploMaker: An improved algorithm for rapid haplotype assembly of genomic sequences.
    Fruzangohar M; Timmins WA; Kravchuk O; Taylor J
    Gigascience; 2022 May; 11():. PubMed ID: 35579550
    [TBL] [Abstract][Full Text] [Related]  

  • 26. A chaotic viewpoint-based approach to solve haplotype assembly using hypergraph model.
    Olyaee MH; Khanteymoori A; Khalifeh K
    PLoS One; 2020; 15(10):e0241291. PubMed ID: 33120403
    [TBL] [Abstract][Full Text] [Related]  

  • 27. flopp: Extremely Fast Long-Read Polyploid Haplotype Phasing by Uniform Tree Partitioning.
    Shaw J; Yu YW
    J Comput Biol; 2022 Feb; 29(2):195-211. PubMed ID: 35041529
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Haplotype assembly from aligned weighted SNP fragments.
    Zhao YY; Wu LY; Zhang JH; Wang RS; Zhang XS
    Comput Biol Chem; 2005 Aug; 29(4):281-7. PubMed ID: 16051522
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Haplotype inference from unphased SNP data in heterozygous polyploids based on SAT.
    Neigenfind J; Gyetvai G; Basekow R; Diehl S; Achenbach U; Gebhardt C; Selbig J; Kersten B
    BMC Genomics; 2008 Jul; 9():356. PubMed ID: 18667059
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Exact algorithms for haplotype assembly from whole-genome sequence data.
    Chen ZZ; Deng F; Wang L
    Bioinformatics; 2013 Aug; 29(16):1938-45. PubMed ID: 23782612
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Ranbow: A fast and accurate method for polyploid haplotype reconstruction.
    Moeinzadeh MH; Yang J; Muzychenko E; Gallone G; Heller D; Reinert K; Haas S; Vingron M
    PLoS Comput Biol; 2020 May; 16(5):e1007843. PubMed ID: 32469863
    [TBL] [Abstract][Full Text] [Related]  

  • 32. HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads.
    Beretta S; Patterson MD; Zaccaria S; Della Vedova G; Bonizzoni P
    BMC Bioinformatics; 2018 Jul; 19(1):252. PubMed ID: 29970002
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Improved haplotype assembly using Xor genotypes.
    Mousavi SR
    J Theor Biol; 2012 Apr; 298():122-30. PubMed ID: 22251889
    [TBL] [Abstract][Full Text] [Related]  

  • 34. The linkage method: a novel approach for SNP detection and haplotype reconstruction from a single diploid individual using next-generation sequence data.
    Sasaki E; Sugino RP; Innan H
    Mol Biol Evol; 2013 Sep; 30(9):2187-96. PubMed ID: 23728796
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Efficient algorithms for polyploid haplotype phasing.
    He D; Saha S; Finkers R; Parida L
    BMC Genomics; 2018 May; 19(Suppl 2):110. PubMed ID: 29764364
    [TBL] [Abstract][Full Text] [Related]  

  • 36. HapCol: accurate and memory-efficient haplotype assembly from long reads.
    Pirola Y; Zaccaria S; Dondi R; Klau GW; Pisanti N; Bonizzoni P
    Bioinformatics; 2016 Jun; 32(11):1610-7. PubMed ID: 26315913
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Scalable telomere-to-telomere assembly for diploid and polyploid genomes with double graph.
    Cheng H; Asri M; Lucas J; Koren S; Li H
    Nat Methods; 2024 Jun; 21(6):967-970. PubMed ID: 38730258
    [TBL] [Abstract][Full Text] [Related]  

  • 38. MixSIH: a mixture model for single individual haplotyping.
    Matsumoto H; Kiryu H
    BMC Genomics; 2013; 14 Suppl 2(Suppl 2):S5. PubMed ID: 23445519
    [TBL] [Abstract][Full Text] [Related]  

  • 39. A fast and accurate algorithm for diploid individual haplotype reconstruction.
    Wu J; Liang B
    J Bioinform Comput Biol; 2013 Aug; 11(4):1350010. PubMed ID: 23859274
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Better ILP models for haplotype assembly.
    Etemadi M; Bagherian M; Chen ZZ; Wang L
    BMC Bioinformatics; 2018 Feb; 19(Suppl 1):52. PubMed ID: 29504891
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 10.