605 related articles for article (PubMed ID: 25886820)
1. Assessing structural variation in a personal genome-towards a human reference diploid genome.
English AC; Salerno WJ; Hampton OA; Gonzaga-Jauregui C; Ambreth S; Ritter DI; Beck CR; Davis CF; Dahdouli M; Ma S; Carroll A; Veeraraghavan N; Bruestle J; Drees B; Hastie A; Lam ET; White S; Mishra P; Wang M; Han Y; Zhang F; Stankiewicz P; Wheeler DA; Reid JG; Muzny DM; Rogers J; Sabo A; Worley KC; Lupski JR; Boerwinkle E; Gibbs RA
BMC Genomics; 2015 Apr; 16(1):286. PubMed ID: 25886820
[TBL] [Abstract][Full Text] [Related]
2. SVachra: a tool to identify genomic structural variation in mate pair sequencing data containing inward and outward facing reads.
Hampton OA; English AC; Wang M; Salerno WJ; Liu Y; Muzny DM; Han Y; Wheeler DA; Worley KC; Lupski JR; Gibbs RA
BMC Genomics; 2017 Oct; 18(Suppl 6):691. PubMed ID: 28984202
[TBL] [Abstract][Full Text] [Related]
3. Discovery and genotyping of structural variation from long-read haploid genome sequence data.
Huddleston J; Chaisson MJP; Steinberg KM; Warren W; Hoekzema K; Gordon D; Graves-Lindsay TA; Munson KM; Kronenberg ZN; Vives L; Peluso P; Boitano M; Chin CS; Korlach J; Wilson RK; Eichler EE
Genome Res; 2017 May; 27(5):677-685. PubMed ID: 27895111
[TBL] [Abstract][Full Text] [Related]
4. HySA: a Hybrid Structural variant Assembly approach using next-generation and single-molecule sequencing technologies.
Fan X; Chaisson M; Nakhleh L; Chen K
Genome Res; 2017 May; 27(5):793-800. PubMed ID: 28104618
[TBL] [Abstract][Full Text] [Related]
5. Detection and visualization of complex structural variants from long reads.
Stephens Z; Wang C; Iyer RK; Kocher JP
BMC Bioinformatics; 2018 Dec; 19(Suppl 20):508. PubMed ID: 30577744
[TBL] [Abstract][Full Text] [Related]
6. Comparison of multiple algorithms to reliably detect structural variants in pears.
Liu Y; Zhang M; Sun J; Chang W; Sun M; Zhang S; Wu J
BMC Genomics; 2020 Jan; 21(1):61. PubMed ID: 31959124
[TBL] [Abstract][Full Text] [Related]
7. Characterization of structural variants with single molecule and hybrid sequencing approaches.
Ritz A; Bashir A; Sindi S; Hsu D; Hajirasouliha I; Raphael BJ
Bioinformatics; 2014 Dec; 30(24):3458-66. PubMed ID: 25355789
[TBL] [Abstract][Full Text] [Related]
8. Challenges in studying genomic structural variant formation mechanisms: the short-read dilemma and beyond.
Onishi-Seebacher M; Korbel JO
Bioessays; 2011 Nov; 33(11):840-50. PubMed ID: 21959584
[TBL] [Abstract][Full Text] [Related]
9. nanotatoR: a tool for enhanced annotation of genomic structural variants.
Bhattacharya S; Barseghyan H; Délot EC; Vilain E
BMC Genomics; 2021 Jan; 22(1):10. PubMed ID: 33407088
[TBL] [Abstract][Full Text] [Related]
10. Robust Benchmark Structural Variant Calls of An Asian Using State-of-the-art Long-read Sequencing Technologies.
Du X; Li L; Liang F; Liu S; Zhang W; Sun S; Sun Y; Fan F; Wang L; Liang X; Qiu W; Fan G; Wang O; Yang W; Zhang J; Xiao Y; Wang Y; Wang D; Qu S; Chen F; Huang J
Genomics Proteomics Bioinformatics; 2022 Feb; 20(1):192-204. PubMed ID: 33662625
[TBL] [Abstract][Full Text] [Related]
11. Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection.
Canaguier A; Guilbaud R; Denis E; Magdelenat G; Belser C; Istace B; Cruaud C; Wincker P; Le Paslier MC; Faivre-Rampant P; Barbe V
BMC Genomics; 2022 Apr; 23(1):317. PubMed ID: 35448948
[TBL] [Abstract][Full Text] [Related]
12. Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies.
Talsania K; Shen TW; Chen X; Jaeger E; Li Z; Chen Z; Chen W; Tran B; Kusko R; Wang L; Pang AWC; Yang Z; Choudhari S; Colgan M; Fang LT; Carroll A; Shetty J; Kriga Y; German O; Smirnova T; Liu T; Li J; Kellman B; Hong K; Hastie AR; Natarajan A; Moshrefi A; Granat A; Truong T; Bombardi R; Mankinen V; Meerzaman D; Mason CE; Collins J; Stahlberg E; Xiao C; Wang C; Xiao W; Zhao Y
Genome Biol; 2022 Dec; 23(1):255. PubMed ID: 36514120
[TBL] [Abstract][Full Text] [Related]
13. svclassify: a method to establish benchmark structural variant calls.
Parikh H; Mohiyuddin M; Lam HY; Iyer H; Chen D; Pratt M; Bartha G; Spies N; Losert W; Zook JM; Salit M
BMC Genomics; 2016 Jan; 17():64. PubMed ID: 26772178
[TBL] [Abstract][Full Text] [Related]
14. NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data.
Fang L; Hu J; Wang D; Wang K
BMC Bioinformatics; 2018 May; 19(1):180. PubMed ID: 29792160
[TBL] [Abstract][Full Text] [Related]
15. NPSV: A simulation-driven approach to genotyping structural variants in whole-genome sequencing data.
Linderman MD; Paudyal C; Shakeel M; Kelley W; Bashir A; Gelb BD
Gigascience; 2021 Jul; 10(7):. PubMed ID: 34195837
[TBL] [Abstract][Full Text] [Related]
16. SVJedi: genotyping structural variations with long reads.
Lecompte L; Peterlongo P; Lavenier D; Lemaitre C
Bioinformatics; 2020 Nov; 36(17):4568-4575. PubMed ID: 32437523
[TBL] [Abstract][Full Text] [Related]
17. Structural variation detection using next-generation sequencing data: A comparative technical review.
Guan P; Sung WK
Methods; 2016 Jun; 102():36-49. PubMed ID: 26845461
[TBL] [Abstract][Full Text] [Related]
18. rMFilter: acceleration of long read-based structure variation calling by chimeric read filtering.
Liu B; Jiang T; Yiu SM; Li J; Wang Y
Bioinformatics; 2017 Sep; 33(17):2750-2752. PubMed ID: 28482046
[TBL] [Abstract][Full Text] [Related]
19. Expectations and blind spots for structural variation detection from long-read assemblies and short-read genome sequencing technologies.
Zhao X; Collins RL; Lee WP; Weber AM; Jun Y; Zhu Q; Weisburd B; Huang Y; Audano PA; Wang H; Walker M; Lowther C; Fu J; ; Gerstein MB; Devine SE; Marschall T; Korbel JO; Eichler EE; Chaisson MJP; Lee C; Mills RE; Brand H; Talkowski ME
Am J Hum Genet; 2021 May; 108(5):919-928. PubMed ID: 33789087
[TBL] [Abstract][Full Text] [Related]
20. Toolkit for automated and rapid discovery of structural variants.
Soylev A; Kockan C; Hormozdiari F; Alkan C
Methods; 2017 Oct; 129():3-7. PubMed ID: 28583483
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
