180 related articles for article (PubMed ID: 25887925)
1. OpenMS-Simulator: an open-source software for theoretical tandem mass spectrum prediction.
Wang Y; Yang F; Wu P; Bu D; Sun S
BMC Bioinformatics; 2015 Apr; 16():110. PubMed ID: 25887925
[TBL] [Abstract][Full Text] [Related]
2. MS-Simulator: predicting y-ion intensities for peptides with two charges based on the intensity ratio of neighboring ions.
Sun S; Yang F; Yang Q; Zhang H; Wang Y; Bu D; Ma B
J Proteome Res; 2012 Sep; 11(9):4509-16. PubMed ID: 22794508
[TBL] [Abstract][Full Text] [Related]
3. A Frequency-Based Approach to Predict the Low-Energy Collision-Induced Dissociation Fragmentation Spectra.
Ramachandran S; Thomas T
ACS Omega; 2020 Jun; 5(22):12615-12622. PubMed ID: 32548445
[TBL] [Abstract][Full Text] [Related]
4. Evaluating de novo sequencing in proteomics: already an accurate alternative to database-driven peptide identification?
Muth T; Renard BY
Brief Bioinform; 2018 Sep; 19(5):954-970. PubMed ID: 28369237
[TBL] [Abstract][Full Text] [Related]
5. PI: an open-source software package for validation of the SEQUEST result and visualization of mass spectrum.
Qiao Y; Zhang H; Bu D; Sun S
BMC Bioinformatics; 2011 Jun; 12():234. PubMed ID: 21672262
[TBL] [Abstract][Full Text] [Related]
6. pNovo: de novo peptide sequencing and identification using HCD spectra.
Chi H; Sun RX; Yang B; Song CQ; Wang LH; Liu C; Fu Y; Yuan ZF; Wang HP; He SM; Dong MQ
J Proteome Res; 2010 May; 9(5):2713-24. PubMed ID: 20329752
[TBL] [Abstract][Full Text] [Related]
7. Deriving the probabilities of water loss and ammonia loss for amino acids from tandem mass spectra.
Sun S; Yu C; Qiao Y; Lin Y; Dong G; Liu C; Zhang J; Zhang Z; Cai J; Zhang H; Bu D
J Proteome Res; 2008 Jan; 7(1):202-8. PubMed ID: 18092745
[TBL] [Abstract][Full Text] [Related]
8. MS2PIP prediction server: compute and visualize MS2 peak intensity predictions for CID and HCD fragmentation.
Degroeve S; Maddelein D; Martens L
Nucleic Acids Res; 2015 Jul; 43(W1):W326-30. PubMed ID: 25990723
[TBL] [Abstract][Full Text] [Related]
9. MaSS-Simulator: A Highly Configurable Simulator for Generating MS/MS Datasets for Benchmarking of Proteomics Algorithms.
Awan MG; Saeed F
Proteomics; 2018 Oct; 18(20):e1800206. PubMed ID: 30216669
[TBL] [Abstract][Full Text] [Related]
10. Improving Peptide-Spectrum Matching by Fragmentation Prediction Using Hidden Markov Models.
Kirik U; Refsgaard JC; Jensen LJ
J Proteome Res; 2019 Jun; 18(6):2385-2396. PubMed ID: 31074280
[TBL] [Abstract][Full Text] [Related]
11. Probabilistic consensus scoring improves tandem mass spectrometry peptide identification.
Nahnsen S; Bertsch A; Rahnenführer J; Nordheim A; Kohlbacher O
J Proteome Res; 2011 Aug; 10(8):3332-43. PubMed ID: 21644507
[TBL] [Abstract][Full Text] [Related]
12. Harvest: an open-source tool for the validation and improvement of peptide identification metrics and fragmentation exploration.
McHugh LC; Arthur JW
BMC Bioinformatics; 2010 Sep; 11():448. PubMed ID: 20815925
[TBL] [Abstract][Full Text] [Related]
13. Prediction of peptide fragment ion mass spectra by data mining techniques.
Dong NP; Liang YZ; Xu QS; Mok DK; Yi LZ; Lu HM; He M; Fan W
Anal Chem; 2014 Aug; 86(15):7446-54. PubMed ID: 25032905
[TBL] [Abstract][Full Text] [Related]
14. Preprocessing Tandem Mass Spectra Using Genetic Programming for Peptide Identification.
Azari S; Xue B; Zhang M; Peng L
J Am Soc Mass Spectrom; 2019 Jul; 30(7):1294-1307. PubMed ID: 31025295
[TBL] [Abstract][Full Text] [Related]
15. A simulated MS/MS library for spectrum-to-spectrum searching in large scale identification of proteins.
Yen CY; Meyer-Arendt K; Eichelberger B; Sun S; Houel S; Old WM; Knight R; Ahn NG; Hunter LE; Resing KA
Mol Cell Proteomics; 2009 Apr; 8(4):857-69. PubMed ID: 19106086
[TBL] [Abstract][Full Text] [Related]
16. High-quality MS/MS spectrum prediction for data-dependent and data-independent acquisition data analysis.
Tiwary S; Levy R; Gutenbrunner P; Salinas Soto F; Palaniappan KK; Deming L; Berndl M; Brant A; Cimermancic P; Cox J
Nat Methods; 2019 Jun; 16(6):519-525. PubMed ID: 31133761
[TBL] [Abstract][Full Text] [Related]
17. De novo peptide sequencing using CID and HCD spectra pairs.
Yan Y; Kusalik AJ; Wu FX
Proteomics; 2016 Oct; 16(20):2615-2624. PubMed ID: 27402425
[TBL] [Abstract][Full Text] [Related]
18. Fast and Efficient XML Data Access for Next-Generation Mass Spectrometry.
Röst HL; Schmitt U; Aebersold R; Malmström L
PLoS One; 2015; 10(4):e0125108. PubMed ID: 25927999
[TBL] [Abstract][Full Text] [Related]
19. Rapid and accurate peptide identification from tandem mass spectra.
Park CY; Klammer AA; Käll L; MacCoss MJ; Noble WS
J Proteome Res; 2008 Jul; 7(7):3022-7. PubMed ID: 18505281
[TBL] [Abstract][Full Text] [Related]
20. MS2-Deisotoper: A Tool for Deisotoping High-Resolution MS/MS Spectra in Normal and Heavy Isotope-Labelled Samples.
Tay AP; Liang A; Hamey JJ; Hart-Smith G; Wilkins MR
Proteomics; 2019 Sep; 19(17):e1800444. PubMed ID: 31328383
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]