These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
177 related articles for article (PubMed ID: 25888118)
1. CHEXVIS: a tool for molecular channel extraction and visualization. Masood TB; Sandhya S; Chandra N; Natarajan V BMC Bioinformatics; 2015 Apr; 16():119. PubMed ID: 25888118 [TBL] [Abstract][Full Text] [Related]
2. CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures. Kozlikova B; Sebestova E; Sustr V; Brezovsky J; Strnad O; Daniel L; Bednar D; Pavelka A; Manak M; Bezdeka M; Benes P; Kotry M; Gora A; Damborsky J; Sochor J Bioinformatics; 2014 Sep; 30(18):2684-5. PubMed ID: 24876375 [TBL] [Abstract][Full Text] [Related]
3. PoreWalker: a novel tool for the identification and characterization of channels in transmembrane proteins from their three-dimensional structure. Pellegrini-Calace M; Maiwald T; Thornton JM PLoS Comput Biol; 2009 Jul; 5(7):e1000440. PubMed ID: 19609355 [TBL] [Abstract][Full Text] [Related]
4. MolAxis: a server for identification of channels in macromolecules. Yaffe E; Fishelovitch D; Wolfson HJ; Halperin D; Nussinov R Nucleic Acids Res; 2008 Jul; 36(Web Server issue):W210-5. PubMed ID: 18448468 [TBL] [Abstract][Full Text] [Related]
6. eF-seek: prediction of the functional sites of proteins by searching for similar electrostatic potential and molecular surface shape. Kinoshita K; Murakami Y; Nakamura H Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W398-402. PubMed ID: 17567616 [TBL] [Abstract][Full Text] [Related]
7. The visualCMAT: A web-server to select and interpret correlated mutations/co-evolving residues in protein families. Suplatov D; Sharapova Y; Timonina D; Kopylov K; Švedas V J Bioinform Comput Biol; 2018 Apr; 16(2):1840005. PubMed ID: 29361894 [TBL] [Abstract][Full Text] [Related]
8. Web3DMol: interactive protein structure visualization based on WebGL. Shi M; Gao J; Zhang MQ Nucleic Acids Res; 2017 Jul; 45(W1):W523-W527. PubMed ID: 28482028 [TBL] [Abstract][Full Text] [Related]
9. Computational Ion Channel Research: from the Application of Artificial Intelligence to Molecular Dynamics Simulations. Menke J; Maskri S; Koch O Cell Physiol Biochem; 2021 Mar; 55(S3):14-45. PubMed ID: 33656309 [TBL] [Abstract][Full Text] [Related]
11. MolAxis: efficient and accurate identification of channels in macromolecules. Yaffe E; Fishelovitch D; Wolfson HJ; Halperin D; Nussinov R Proteins; 2008 Oct; 73(1):72-86. PubMed ID: 18393395 [TBL] [Abstract][Full Text] [Related]
12. TransPath: a computational method for locating ion transit pathways through membrane proteins. Kuang Z; Liu A; Beck TL Proteins; 2008 May; 71(3):1349-59. PubMed ID: 18058905 [TBL] [Abstract][Full Text] [Related]
13. MOLVIE: an interactive visualization environment for molecular structures. Sun H; Li M; Xu Y Comput Methods Programs Biomed; 2003 May; 71(1):85-90. PubMed ID: 12725967 [TBL] [Abstract][Full Text] [Related]
14. Theoretical and computational models of biological ion channels. Roux B; Allen T; Bernèche S; Im W Q Rev Biophys; 2004 Feb; 37(1):15-103. PubMed ID: 17390604 [TBL] [Abstract][Full Text] [Related]
16. Molecular modeling and simulation studies of ion channel structures, dynamics and mechanisms. Tai K; Fowler P; Mokrab Y; Stansfeld P; Sansom MS Methods Cell Biol; 2008; 90():233-65. PubMed ID: 19195554 [TBL] [Abstract][Full Text] [Related]
17. IonchanPred 2.0: A Tool to Predict Ion Channels and Their Types. Zhao YW; Su ZD; Yang W; Lin H; Chen W; Tang H Int J Mol Sci; 2017 Aug; 18(9):. PubMed ID: 28837067 [TBL] [Abstract][Full Text] [Related]
19. PoreLogo: a new tool to analyse, visualize and compare channels in transmembrane proteins. Oliva R; Thornton JM; Pellegrini-Calace M Bioinformatics; 2009 Dec; 25(23):3183-4. PubMed ID: 19762348 [TBL] [Abstract][Full Text] [Related]
20. KING (Kinemage, Next Generation): a versatile interactive molecular and scientific visualization program. Chen VB; Davis IW; Richardson DC Protein Sci; 2009 Nov; 18(11):2403-9. PubMed ID: 19768809 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]