These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

210 related articles for article (PubMed ID: 25890833)

  • 1. WHATIF: An open-source desktop application for extraction and management of the incidental findings from next-generation sequencing variant data.
    Ye Z; Kadolph C; Strenn R; Wall D; McPherson E; Lin S
    Comput Biol Med; 2016 Jan; 68():165-9. PubMed ID: 25890833
    [TBL] [Abstract][Full Text] [Related]  

  • 2. VCF-Server: A web-based visualization tool for high-throughput variant data mining and management.
    Jiang J; Gu J; Zhao T; Lu H
    Mol Genet Genomic Med; 2019 Jul; 7(7):e00641. PubMed ID: 31127704
    [TBL] [Abstract][Full Text] [Related]  

  • 3. SNVerGUI: a desktop tool for variant analysis of next-generation sequencing data.
    Wang W; Hu W; Hou F; Hu P; Wei Z
    J Med Genet; 2012 Dec; 49(12):753-5. PubMed ID: 23024288
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Genome analysis and knowledge-driven variant interpretation with TGex.
    Dahary D; Golan Y; Mazor Y; Zelig O; Barshir R; Twik M; Iny Stein T; Rosner G; Kariv R; Chen F; Zhang Q; Shen Y; Safran M; Lancet D; Fishilevich S
    BMC Med Genomics; 2019 Dec; 12(1):200. PubMed ID: 31888639
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Cruxome: a powerful tool for annotating, interpreting and reporting genetic variants.
    Han Q; Yang Y; Wu S; Liao Y; Zhang S; Liang H; Cram DS; Zhang Y
    BMC Genomics; 2021 Jun; 22(1):407. PubMed ID: 34082700
    [TBL] [Abstract][Full Text] [Related]  

  • 6. VCF.Filter: interactive prioritization of disease-linked genetic variants from sequencing data.
    Müller H; Jimenez-Heredia R; Krolo A; Hirschmugl T; Dmytrus J; Boztug K; Bock C
    Nucleic Acids Res; 2017 Jul; 45(W1):W567-W572. PubMed ID: 28520890
    [TBL] [Abstract][Full Text] [Related]  

  • 7. myVCF: a desktop application for high-throughput mutations data management.
    Pietrelli A; Valenti L
    Bioinformatics; 2017 Nov; 33(22):3676-3678. PubMed ID: 29036298
    [TBL] [Abstract][Full Text] [Related]  

  • 8. TAPES: A tool for assessment and prioritisation in exome studies.
    Xavier A; Scott RJ; Talseth-Palmer BA
    PLoS Comput Biol; 2019 Oct; 15(10):e1007453. PubMed ID: 31613886
    [TBL] [Abstract][Full Text] [Related]  

  • 9. FMFilter: A fast model based variant filtering tool.
    Akgün M; Faruk Gerdan Ö; Görmez Z; Demirci H
    J Biomed Inform; 2016 Apr; 60():319-27. PubMed ID: 26925517
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Usability study of clinical exome analysis software: top lessons learned and recommendations.
    Shyr C; Kushniruk A; Wasserman WW
    J Biomed Inform; 2014 Oct; 51():129-36. PubMed ID: 24860971
    [TBL] [Abstract][Full Text] [Related]  

  • 11. The implications of familial incidental findings from exome sequencing: the NIH Undiagnosed Diseases Program experience.
    Lawrence L; Sincan M; Markello T; Adams DR; Gill F; Godfrey R; Golas G; Groden C; Landis D; Nehrebecky M; Park G; Soldatos A; Tifft C; Toro C; Wahl C; Wolfe L; Gahl WA; Boerkoel CF
    Genet Med; 2014 Oct; 16(10):741-50. PubMed ID: 24784157
    [TBL] [Abstract][Full Text] [Related]  

  • 12. VCF-Miner: GUI-based application for mining variants and annotations stored in VCF files.
    Hart SN; Duffy P; Quest DJ; Hossain A; Meiners MA; Kocher JP
    Brief Bioinform; 2016 Mar; 17(2):346-51. PubMed ID: 26210358
    [TBL] [Abstract][Full Text] [Related]  

  • 13. PATH-SCAN: a reporting tool for identifying clinically actionable variants.
    Daneshjou R; Zappala Z; Kukurba K; Boyle SM; Ormond KE; Klein TE; Snyder M; Bustamante CD; Altman RB; Montgomery SB
    Pac Symp Biocomput; 2014; ():229-40. PubMed ID: 24297550
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Prioritizing disease-linked variants, genes, and pathways with an interactive whole-genome analysis pipeline.
    Lee IH; Lee K; Hsing M; Choe Y; Park JH; Kim SH; Bohn JM; Neu MB; Hwang KB; Green RC; Kohane IS; Kong SW
    Hum Mutat; 2014 May; 35(5):537-47. PubMed ID: 24478219
    [TBL] [Abstract][Full Text] [Related]  

  • 15. MendeLIMS: a web-based laboratory information management system for clinical genome sequencing.
    Grimes SM; Ji HP
    BMC Bioinformatics; 2014 Aug; 15(1):290. PubMed ID: 25159034
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Var2GO: a web-based tool for gene variants selection.
    Granata I; Sangiovanni M; Maiorano F; Miele M; Guarracino MR
    BMC Bioinformatics; 2016 Nov; 17(Suppl 12):376. PubMed ID: 28185576
    [TBL] [Abstract][Full Text] [Related]  

  • 17. CANEapp: a user-friendly application for automated next generation transcriptomic data analysis.
    Velmeshev D; Lally P; Magistri M; Faghihi MA
    BMC Genomics; 2016 Jan; 17():49. PubMed ID: 26758513
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Variant Ranker: a web-tool to rank genomic data according to functional significance.
    Alexander J; Mantzaris D; Georgitsi M; Drineas P; Paschou P
    BMC Bioinformatics; 2017 Jul; 18(1):341. PubMed ID: 28716001
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Jannovar: a java library for exome annotation.
    Jäger M; Wang K; Bauer S; Smedley D; Krawitz P; Robinson PN
    Hum Mutat; 2014 May; 35(5):548-55. PubMed ID: 24677618
    [TBL] [Abstract][Full Text] [Related]  

  • 20. An integrated approach for analyzing clinical genomic variant data from next-generation sequencing.
    Crowgey EL; Stabley DL; Chen C; Huang H; Robbins KM; Polson SW; Sol-Church K; Wu CH
    J Biomol Tech; 2015 Apr; 26(1):19-28. PubMed ID: 25649353
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.