BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

415 related articles for article (PubMed ID: 25899044)

  • 1. Global estimation of the 3' untranslated region landscape using RNA sequencing.
    Kim M; You BH; Nam JW
    Methods; 2015 Jul; 83():111-7. PubMed ID: 25899044
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs.
    Jan CH; Friedman RC; Ruby JG; Bartel DP
    Nature; 2011 Jan; 469(7328):97-101. PubMed ID: 21085120
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Implications of polyadenylation in health and disease.
    Curinha A; Oliveira Braz S; Pereira-Castro I; Cruz A; Moreira A
    Nucleus; 2014; 5(6):508-19. PubMed ID: 25484187
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Ubiquitously transcribed genes use alternative polyadenylation to achieve tissue-specific expression.
    Lianoglou S; Garg V; Yang JL; Leslie CS; Mayr C
    Genes Dev; 2013 Nov; 27(21):2380-96. PubMed ID: 24145798
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Dynamic expression of 3' UTRs revealed by Poisson hidden Markov modeling of RNA-Seq: implications in gene expression profiling.
    Lu J; Bushel PR
    Gene; 2013 Sep; 527(2):616-23. PubMed ID: 23845781
    [TBL] [Abstract][Full Text] [Related]  

  • 6. APA-Scan: detection and visualization of 3'-UTR alternative polyadenylation with RNA-seq and 3'-end-seq data.
    Fahmi NA; Ahmed KT; Chang JW; Nassereddeen H; Fan D; Yong J; Zhang W
    BMC Bioinformatics; 2022 Sep; 23(Suppl 3):396. PubMed ID: 36171568
    [TBL] [Abstract][Full Text] [Related]  

  • 7. ExUTR: a novel pipeline for large-scale prediction of 3'-UTR sequences from NGS data.
    Huang Z; Teeling EC
    BMC Genomics; 2017 Nov; 18(1):847. PubMed ID: 29110697
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Upstream elements present in the 3'-untranslated region of collagen genes influence the processing efficiency of overlapping polyadenylation signals.
    Natalizio BJ; Muniz LC; Arhin GK; Wilusz J; Lutz CS
    J Biol Chem; 2002 Nov; 277(45):42733-40. PubMed ID: 12200454
    [TBL] [Abstract][Full Text] [Related]  

  • 9. 3' Untranslated Regions Are Modular Entities That Determine Polyadenylation Profiles.
    Lui KH; Geisberg JV; Moqtaderi Z; Struhl K
    Mol Cell Biol; 2022 Sep; 42(9):e0024422. PubMed ID: 35972270
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Poly(A)-ClickSeq: click-chemistry for next-generation 3΄-end sequencing without RNA enrichment or fragmentation.
    Routh A; Ji P; Jaworski E; Xia Z; Li W; Wagner EJ
    Nucleic Acids Res; 2017 Jul; 45(12):e112. PubMed ID: 28449108
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A comprehensive analysis of 3' end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadenylation.
    Gruber AJ; Schmidt R; Gruber AR; Martin G; Ghosh S; Belmadani M; Keller W; Zavolan M
    Genome Res; 2016 Aug; 26(8):1145-59. PubMed ID: 27382025
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Characterizing mRNA Sequence Motifs in the 3'-UTR Using GFP Reporter Constructs.
    Geissler R; Grimson A
    Methods Mol Biol; 2018; 1720():77-88. PubMed ID: 29236252
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Detecting alternative polyadenylation from microarray data.
    Lembo A; Provero P
    Methods Mol Biol; 2014; 1125():141-4. PubMed ID: 24590786
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Cell-type-specific analysis of alternative polyadenylation using single-cell transcriptomics data.
    Shulman ED; Elkon R
    Nucleic Acids Res; 2019 Nov; 47(19):10027-10039. PubMed ID: 31501864
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Dynamics of alternative polyadenylation in human preimplantation embryos.
    Chang JY; Yu WH; Juan HF; Huang HC
    Biochem Biophys Res Commun; 2018 Oct; 504(4):727-733. PubMed ID: 30217451
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Knock-down of 25 kDa subunit of cleavage factor Im in Hela cells alters alternative polyadenylation within 3'-UTRs.
    Kubo T; Wada T; Yamaguchi Y; Shimizu A; Handa H
    Nucleic Acids Res; 2006; 34(21):6264-71. PubMed ID: 17098938
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Dynamic analyses of alternative polyadenylation from RNA-seq reveal a 3'-UTR landscape across seven tumour types.
    Xia Z; Donehower LA; Cooper TA; Neilson JR; Wheeler DA; Wagner EJ; Li W
    Nat Commun; 2014 Nov; 5():5274. PubMed ID: 25409906
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Roar: detecting alternative polyadenylation with standard mRNA sequencing libraries.
    Grassi E; Mariella E; Lembo A; Molineris I; Provero P
    BMC Bioinformatics; 2016 Oct; 17(1):423. PubMed ID: 27756200
    [TBL] [Abstract][Full Text] [Related]  

  • 19. mountainClimber Identifies Alternative Transcription Start and Polyadenylation Sites in RNA-Seq.
    Cass AA; Xiao X
    Cell Syst; 2019 Oct; 9(4):393-400.e6. PubMed ID: 31542416
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Recurrent tumor-specific regulation of alternative polyadenylation of cancer-related genes.
    Xue Z; Warren RL; Gibb EA; MacMillan D; Wong J; Chiu R; Hammond SA; Yang C; Nip KM; Ennis CA; Hahn A; Reynolds S; Birol I
    BMC Genomics; 2018 Jul; 19(1):536. PubMed ID: 30005633
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 21.