348 related articles for article (PubMed ID: 25903198)
21. Computation-based discovery of cis-regulatory modules by hidden Markov model.
Wu J; Xie J
J Comput Biol; 2008 Apr; 15(3):279-90. PubMed ID: 18333759
[TBL] [Abstract][Full Text] [Related]
22. CisView: a browser and database of cis-regulatory modules predicted in the mouse genome.
Sharov AA; Dudekula DB; Ko MS
DNA Res; 2006 Jun; 13(3):123-34. PubMed ID: 16980320
[TBL] [Abstract][Full Text] [Related]
23. Transcription Factors Involved in Tumorigenesis Are Over-Represented in Mutated Active DNA-Binding Sites in Neuroblastoma.
Capasso M; Lasorsa VA; Cimmino F; Avitabile M; Cantalupo S; Montella A; De Angelis B; Morini M; de Torres C; Castellano A; Locatelli F; Iolascon A
Cancer Res; 2020 Feb; 80(3):382-393. PubMed ID: 31784426
[TBL] [Abstract][Full Text] [Related]
24. Identification of coding and non-coding mutational hotspots in cancer genomes.
Piraino SW; Furney SJ
BMC Genomics; 2017 Jan; 18(1):17. PubMed ID: 28056774
[TBL] [Abstract][Full Text] [Related]
25. Promoter addresses: revelations from oligonucleotide profiling applied to the Escherichia coli genome.
Sivaraman K; Seshasayee AS; Swaminathan K; Muthukumaran G; Pennathur G
Theor Biol Med Model; 2005 May; 2():20. PubMed ID: 15927055
[TBL] [Abstract][Full Text] [Related]
26. Non-coding transcription at cis-regulatory elements: computational and experimental approaches.
Simonatto M; Barozzi I; Natoli G
Methods; 2013 Sep; 63(1):66-75. PubMed ID: 23542771
[TBL] [Abstract][Full Text] [Related]
27. A Significant Regulatory Mutation Burden at a High-Affinity Position of the CTCF Motif in Gastrointestinal Cancers.
Umer HM; Cavalli M; Dabrowski MJ; Diamanti K; Kruczyk M; Pan G; Komorowski J; Wadelius C
Hum Mutat; 2016 Sep; 37(9):904-13. PubMed ID: 27174533
[TBL] [Abstract][Full Text] [Related]
28. Whole-exome sequencing reveals recurrent somatic mutation networks in cancer.
Liu X; Wang J; Chen L
Cancer Lett; 2013 Nov; 340(2):270-6. PubMed ID: 23153794
[TBL] [Abstract][Full Text] [Related]
29. Frequent gain and loss of functional transcription factor binding sites.
Doniger SW; Fay JC
PLoS Comput Biol; 2007 May; 3(5):e99. PubMed ID: 17530920
[TBL] [Abstract][Full Text] [Related]
30. Identification of key mechanisms controlling gene expression in Leishmania infected macrophages using genome-wide promoter analysis.
Ghedira K; Hornischer K; Konovalova T; Jenhani AZ; Benkahla A; Kel A
Infect Genet Evol; 2011 Jun; 11(4):769-77. PubMed ID: 21093613
[TBL] [Abstract][Full Text] [Related]
31. MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes.
Marinescu VD; Kohane IS; Riva A
BMC Bioinformatics; 2005 Mar; 6():79. PubMed ID: 15799782
[TBL] [Abstract][Full Text] [Related]
32. Identification of negative regulatory regions within the first exon and intron of the BCL6 gene.
Kikuchi M; Miki T; Kumagai T; Fukuda T; Kamiyama R; Miyasaka N; Hirosawa S
Oncogene; 2000 Oct; 19(42):4941-5. PubMed ID: 11039912
[TBL] [Abstract][Full Text] [Related]
33. Systematic analysis of disease-related regulatory mutation classes reveals distinct effects on transcription factor binding.
Laurila K; Lähdesmäki H
In Silico Biol; 2009; 9(4):209-24. PubMed ID: 20109151
[TBL] [Abstract][Full Text] [Related]
34. A concept for ab initio prediction of cis-regulatory modules.
Ecker K; Welch L
In Silico Biol; 2009; 9(5-6):285-306. PubMed ID: 22430433
[TBL] [Abstract][Full Text] [Related]
35. Mutational Biases Drive Elevated Rates of Substitution at Regulatory Sites across Cancer Types.
Kaiser VB; Taylor MS; Semple CA
PLoS Genet; 2016 Aug; 12(8):e1006207. PubMed ID: 27490693
[TBL] [Abstract][Full Text] [Related]
36. Functional characterization of the human SOX3 promoter: identification of transcription factors implicated in basal promoter activity.
Kovacevic Grujicic N; Mojsin M; Krstic A; Stevanovic M
Gene; 2005 Jan; 344():287-97. PubMed ID: 15656994
[TBL] [Abstract][Full Text] [Related]
37. Integrating genomic data to predict transcription factor binding.
Holloway DT; Kon M; DeLisi C
Genome Inform; 2005; 16(1):83-94. PubMed ID: 16362910
[TBL] [Abstract][Full Text] [Related]
38. OncoCis: annotation of cis-regulatory mutations in cancer.
Perera D; Chacon D; Thoms JA; Poulos RC; Shlien A; Beck D; Campbell PJ; Pimanda JE; Wong JW
Genome Biol; 2014; 15(10):485. PubMed ID: 25298093
[TBL] [Abstract][Full Text] [Related]
39. Diversification at transcription factor binding sites within a species and the implications for environmental adaptation.
Ames RM; Lovell SC
Mol Biol Evol; 2011 Dec; 28(12):3331-44. PubMed ID: 21693437
[TBL] [Abstract][Full Text] [Related]
40. Krox20 hindbrain cis-regulatory landscape: interplay between multiple long-range initiation and autoregulatory elements.
Chomette D; Frain M; Cereghini S; Charnay P; Ghislain J
Development; 2006 Apr; 133(7):1253-62. PubMed ID: 16495311
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
