181 related articles for article (PubMed ID: 25910696)
1. Data-dependent bucketing improves reference-free compression of sequencing reads.
Patro R; Kingsford C
Bioinformatics; 2015 Sep; 31(17):2770-7. PubMed ID: 25910696
[TBL] [Abstract][Full Text] [Related]
2. Reference-based compression of short-read sequences using path encoding.
Kingsford C; Patro R
Bioinformatics; 2015 Jun; 31(12):1920-8. PubMed ID: 25649622
[TBL] [Abstract][Full Text] [Related]
3. SCALCE: boosting sequence compression algorithms using locally consistent encoding.
Hach F; Numanagic I; Alkan C; Sahinalp SC
Bioinformatics; 2012 Dec; 28(23):3051-7. PubMed ID: 23047557
[TBL] [Abstract][Full Text] [Related]
4. Quark enables semi-reference-based compression of RNA-seq data.
Sarkar H; Patro R
Bioinformatics; 2017 Nov; 33(21):3380-3386. PubMed ID: 29077806
[TBL] [Abstract][Full Text] [Related]
5. Compression of genomic sequencing reads via hash-based reordering: algorithm and analysis.
Chandak S; Tatwawadi K; Weissman T
Bioinformatics; 2018 Feb; 34(4):558-567. PubMed ID: 29444237
[TBL] [Abstract][Full Text] [Related]
6. Reference-free compression of high throughput sequencing data with a probabilistic de Bruijn graph.
Benoit G; Lemaitre C; Lavenier D; Drezen E; Dayris T; Uricaru R; Rizk G
BMC Bioinformatics; 2015 Sep; 16():288. PubMed ID: 26370285
[TBL] [Abstract][Full Text] [Related]
7. Light-weight reference-based compression of FASTQ data.
Zhang Y; Li L; Yang Y; Yang X; He S; Zhu Z
BMC Bioinformatics; 2015 Jun; 16(1):188. PubMed ID: 26051252
[TBL] [Abstract][Full Text] [Related]
8. smallWig: parallel compression of RNA-seq WIG files.
Wang Z; Weissman T; Milenkovic O
Bioinformatics; 2016 Jan; 32(2):173-80. PubMed ID: 26424856
[TBL] [Abstract][Full Text] [Related]
9. CALQ: compression of quality values of aligned sequencing data.
Voges J; Ostermann J; Hernaez M
Bioinformatics; 2018 May; 34(10):1650-1658. PubMed ID: 29186284
[TBL] [Abstract][Full Text] [Related]
10. High-speed and high-ratio referential genome compression.
Liu Y; Peng H; Wong L; Li J
Bioinformatics; 2017 Nov; 33(21):3364-3372. PubMed ID: 28651329
[TBL] [Abstract][Full Text] [Related]
11. FastqCLS: a FASTQ compressor for long-read sequencing via read reordering using a novel scoring model.
Lee D; Song G
Bioinformatics; 2022 Jan; 38(2):351-356. PubMed ID: 34623374
[TBL] [Abstract][Full Text] [Related]
12. FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads.
Lam KK; LaButti K; Khalak A; Tse D
Bioinformatics; 2015 Oct; 31(19):3207-9. PubMed ID: 26040454
[TBL] [Abstract][Full Text] [Related]
13. LFQC: a lossless compression algorithm for FASTQ files.
Nicolae M; Pathak S; Rajasekaran S
Bioinformatics; 2015 Oct; 31(20):3276-81. PubMed ID: 26093148
[TBL] [Abstract][Full Text] [Related]
14. AFRESh: an adaptive framework for compression of reads and assembled sequences with random access functionality.
Paridaens T; Van Wallendael G; De Neve W; Lambert P
Bioinformatics; 2017 May; 33(10):1464-1472. PubMed ID: 28057687
[TBL] [Abstract][Full Text] [Related]
15. ERGC: an efficient referential genome compression algorithm.
Saha S; Rajasekaran S
Bioinformatics; 2015 Nov; 31(21):3468-75. PubMed ID: 26139636
[TBL] [Abstract][Full Text] [Related]
16. When less is more: 'slicing' sequencing data improves read decoding accuracy and de novo assembly quality.
Lonardi S; Mirebrahim H; Wanamaker S; Alpert M; Ciardo G; Duma D; Close TJ
Bioinformatics; 2015 Sep; 31(18):2972-80. PubMed ID: 25995232
[TBL] [Abstract][Full Text] [Related]
17. Compression of next-generation sequencing reads aided by highly efficient de novo assembly.
Jones DC; Ruzzo WL; Peng X; Katze MG
Nucleic Acids Res; 2012 Dec; 40(22):e171. PubMed ID: 22904078
[TBL] [Abstract][Full Text] [Related]
18. METHCOMP: a special purpose compression platform for DNA methylation data.
Peng J; Milenkovic O; Ochoa I
Bioinformatics; 2018 Aug; 34(15):2654-2656. PubMed ID: 29528370
[TBL] [Abstract][Full Text] [Related]
19. Index suffix-prefix overlaps by (w, k)-minimizer to generate long contigs for reads compression.
Liu Y; Yu Z; Dinger ME; Li J
Bioinformatics; 2019 Jun; 35(12):2066-2074. PubMed ID: 30407482
[TBL] [Abstract][Full Text] [Related]
20. Advances in high throughput DNA sequence data compression.
Sardaraz M; Tahir M; Ikram AA
J Bioinform Comput Biol; 2016 Jun; 14(3):1630002. PubMed ID: 26846812
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
